Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01817 ATGGAGGCTAAATTTCGGGGGAAGAATCAGTATGTCTATGGACCTGTGGTGCCGGAAATGAAAGCGGTTGGAAAGAAGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACTGCTAGTCCACTAAATTCAGTTCCATCTGATTGTAGAAATAGGCAGTCTTTCCCAGTTGATTCTGAAATTCCTGCGAAAGCTAATACTTCTAACATTTTATCTTCTAATTGGGATGACGTCAACCCAGAGAAAGGAAAGAGAGAATTGGAAAAAAGGAGGAGAGCTGTTATATCTGAAGGTGATGAGCTGAATGATGAAGCTGGTTGTCTTAATTTAAACCTTGGGGCTCAAATTTACCCTATCATGGAAGGGGATGAAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAGTGGGACTACTTCAAACCGAGCGGTTTGTCAGGTGGAAGATTGTAGGGCCGATCTTAGTAATGCAAAAGATTACCACCGCCGGCATAAGGTTTGTGATGTGCATTCCAAGGCCAGCAAAGCACTGGTAGGAAATGCTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAGGGGAAAAGAAGTTGTCGGAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGGAAGACACACCCTGACGCTGTTGTTAATGGAGGCTCCCTGAGTGATGAAAGGGGCAGCAGCTATCTGTTAACAAGTCTTCTCCGTATACTGTCCAATATGCACTCAAATGGCTCAGATGCTACTAAGGACCAAGATATTCTCTCTCATCTGCTAAGGAATCTGGCAAGTCTGGCTGGTACAATCAATGGAACGAACATAGCCTCCTTATTGGAGGGATCCCAAGGTTTGGTGAATGCTGGGACATCTGGAACTTCCCAAAAAGTGCCTAATCTAAATTCAAATGGCCCTGAACCCATCAGTTCACCTGGTTCTTCCATCAGGACAGATAATGGTCTGAGCCATCAGAACCCTCCAAAGCCTCTGGGACAGTCTGAGACAGTGCCTGCATATGATATGGCGCAAAAATGTTTACCTTCAAGTGATATTGGGGTTGGAAGTTTAAAATCTCCTTCAGGATTACAGCCTTCAAATGCTGTTCTGACAAGGGATGGCCTTCCACCCCAATCAGTTGCAGCTGAGACTACAGTTAGAAGGAACGGTTTAAATCGCATTGACCTCAATAATGTATATGATGACATACAAGATGATGCTGAGAATCTTAGGAAGTCTCATCCACCTGGGGCTTCAGGTATTGGATCTCTTGATCATCCTTCATGGTTACAACTTGACACTCTAAAGTCAAGTCCACCACAGACAAGCAGAAACTCAGATTCAACCTCCTCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCACTTGTCCTTCGATCACAGATTCTCAGCTGGTTATCCCACAGTCCCACAGAGATTGAGAGCTATATAAGGCCAGGCTGCATCATCTTAACAGTATATCTCTGTCTAGAAAAATCTGCATGGGAGGAGCTCAGCGGTAATTTAGGGCTCAGCTTGAAAAAGCTTCTTGCTGCATCAAATGATCCTTTCTGGACAACGGGGTGGGTGTATGCAAGAGTGCAGCATTCTGTAGCCTTTTTGTACAATGGTCAGGTTGTTTTAGACGTTCCCTTGAGCCTTAGAAGCCCACAACACTGTAGGATTTCATTCATTAAACCACTTGCCGTTTCTTCAATGGCAACTACTCAATTTGTTGTCAAAGGTGTCAACCTTTTCCATTCTAGCACAAGGTTACTCTGTGCACTTGAAGGGAAGTATTTGGCACAGCATAGTTGTTGTGACTTGATTGATGGTGTTGATACAGCTATTGAACATGATCAGCATCAGTGCCTTAGCTTCTCTTGTACGATACCAAGTGTTACTGGGAGGGGATTTATTCAGGTGGAAGATCATGGTCTTAGCGGCTGTTCCTTTCCTTTTATTGTTGCGGAGCCAGCAATTTGTGCAGAGATCTGTAATCTGGAGAGTGTGATTGAGGTGGTTGAGATCGGTAAAGATGTAGAGATAAGAAGCAAACAAATGGCAGAAAGGACTCGGGCCTTGGATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGCTAGGTTGGGTCCCATGGCACCTGTCCAGGATCTGTTCCAATTCAATCGGTTCAAGTGGCTTGTTGACTTCTCCATGGACCATGATTGGTGTGCTGTGATGAAAAAGCTTCTGGACATTGTGTTTGAGGGTACTGTTGACACAGGAGAACATGCCTCTGTCGAGCTTGCATTGTTAGACTTGGGTCTTCTGCATAAAGCTGTGAGGAGAAATTGCAGGTCCATGGTGGAACTACTGTTAAAATTCATACCAGTTCAATCTTCAGATGATGACAGTAAGGAGAAACAAGTTGGCAAGCACTCTGACAGATTCTTATTTAAACCAGATAGTGCTGGCCCTGCTGGTTTGACTCCCCTTCATGTTGCGGCAAGCATGCACGGCTCAGAGAATGTATTGGATGCATTAACTGATGACCCTGGAATGGTGGGAATCAAGGCATGGAAGAGTGCACGGGATAACACGGGTTTGACCCCGGAGGACTACGCATCCATGAGGAGGTACCACTCCTACATTGAACTCGTCCAGACAAAAACAAGCAAGAAAAGTGACGAGACTCATCACCATGTGCTCGACATCCCATCTTCCCTTGTAGATAATAACACAAAGAAGAAGCAAAAGTCGTCATCAAAAGTTTTGAGCTTGCAAACCGAGAAGATTAAAATGGCAGCAGCAGCGACAATCCCACATCAGTGCGGGCTATGCCACCACAAGCTGACTTGTCACAGCACGAGGACAGCACTTGTTTATAGGCCAGCAATGCTCTCAATGGTGGCCATTGCAGCTGTGTGTGTGTGTGTGGCTTTGCTCTTCAAAAGCTCGCCCCAAGTCTCCTATGTCTTCCAGCCCTTCACATGGGAATCATTAGGGTATGGCTCAATGTAG 3105 0.4509 MEAKFRGKNQYVYGPVVPEMKAVGKKSLEWNLEDWKWDGDLFTASPLNSVPSDCRNRQSFPVDSEIPAKANTSNILSSNWDDVNPEKGKRELEKRRRAVISEGDELNDEAGCLNLNLGAQIYPIMEGDEKSGKKTKIVGSGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLSDERGSSYLLTSLLRILSNMHSNGSDATKDQDILSHLLRNLASLAGTINGTNIASLLEGSQGLVNAGTSGTSQKVPNLNSNGPEPISSPGSSIRTDNGLSHQNPPKPLGQSETVPAYDMAQKCLPSSDIGVGSLKSPSGLQPSNAVLTRDGLPPQSVAAETTVRRNGLNRIDLNNVYDDIQDDAENLRKSHPPGASGIGSLDHPSWLQLDTLKSSPPQTSRNSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTVYLCLEKSAWEELSGNLGLSLKKLLAASNDPFWTTGWVYARVQHSVAFLYNGQVVLDVPLSLRSPQHCRISFIKPLAVSSMATTQFVVKGVNLFHSSTRLLCALEGKYLAQHSCCDLIDGVDTAIEHDQHQCLSFSCTIPSVTGRGFIQVEDHGLSGCSFPFIVAEPAICAEICNLESVIEVVEIGKDVEIRSKQMAERTRALDFIQEMGWLLHRSRVKARLGPMAPVQDLFQFNRFKWLVDFSMDHDWCAVMKKLLDIVFEGTVDTGEHASVELALLDLGLLHKAVRRNCRSMVELLLKFIPVQSSDDDSKEKQVGKHSDRFLFKPDSAGPAGLTPLHVAASMHGSENVLDALTDDPGMVGIKAWKSARDNTGLTPEDYASMRRYHSYIELVQTKTSKKSDETHHHVLDIPSSLVDNNTKKKQKSSSKVLSLQTEKIKMAAAATIPHQCGLCHHKLTCHSTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPQVSYVFQPFTWESLGYGSM 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01817 1034 Coils Coil 89 109 - -
Accr8g01817 1034 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Accr8g01817 1034 MobiDBLite consensus disorder prediction 301 343 - -
Accr8g01817 1034 Pfam SBP domain 149 222 IPR004333 GO:0003677
Accr8g01817 1034 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 905 IPR044817 GO:0003677
Accr8g01817 1034 MobiDBLite consensus disorder prediction 362 387 - -
Accr8g01817 1034 MobiDBLite consensus disorder prediction 442 474 - -
Accr8g01817 1034 MobiDBLite consensus disorder prediction 213 234 - -
Accr8g01817 1034 Gene3D - 139 210 IPR036893 GO:0003677|GO:0005634
Accr8g01817 1034 SUPERFAMILY Ankyrin repeat 801 914 IPR036770 -
Accr8g01817 1034 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Accr8g01817 1034 MobiDBLite consensus disorder prediction 365 384 - -
Accr8g01817 1034 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Accr8g01817 1034 Gene3D - 786 932 IPR036770 -
Accr8g01817 1034 Coils Coil 404 424 - -
Accr8g01817 1034 MobiDBLite consensus disorder prediction 301 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01817 Accr-Chr8 40606648 40612809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01817 1 1033 SBP-box Gene Family AT3G60030 47.651 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g01817 SBP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01817 - - gmx:100776125 1441.79