Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01808 ATGGCAACAGCTGAGGCAGCTCCTGCTGCTCTTGGTCCCCGATACGCACCTGATGACCCCACTCTTCCAAAACCTTGGAAGGGATTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAGCCTACGGCCCTGCCGTCACCCTTGCCTGCTGGACCACCTCAGTCAGTTTCTGCACCAAAGTTGGCTCCCATACCAGCGGCTCATAAAGGGCAACCTGGTGTAGTGGCGTCGCAGCTTGGGCAGCAGTTACTACAAACCTCTCACCAACAGGGACAGCAAATGAGCCACCTCCCCCAACAGCATAGTCCCCAGGTAGCACAGGTCGCTCAGCAGCAGCCGTCTCAAGCAGCACAAGCTGGACAACAACAGAGTTCACAGCCACTGCAGTCTATGCCACAACCAGGTTTGCAACAAGTCAGGCAGCAGCAGATGTTGCAGCCTCTGAGCCAGCAAATTTCACCACAACAAATGCATCATCAGATGCCCCAACAAGCCGTCCAGCCACAACCTTTTGGGCAAGGAGTCACCCACGATCATGGTTCATATATGGGACAGCCACAAGCCCATCAATTCAGTCACCAGAACCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGACAGCAAAGTTCCCAACCAATCCAGCATAATATGCACGGTCAGCCATTGGAAAATCATCATGAGTTTAAAGCAGCATTCCCAAAGATAGAGGATGTAGATTTTAAAAACGGAAGTCAAGTTGGACTTTCACCATCCCAGTATCAGCAAAAGAGTGCCTTGCCTCTGCAAAGCAATCAGAACATTCCTGCTGGAATTTCCTCTGTCCAGATGCCACGTGTTGGTGTTAATGCTGGCCAAGCACAACCATTCAGTGCTATGTCTGGTGGTATGCAGCAACCTTCTGCAGCAATGCAATCGCAGCAGGGTAGTGCTGATTTACTTTATCAACATGGTCATAACTTTAAAAACCAGATGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGTCCATCCTGTTGACCCAAAGATGGGACATGAGGATAACTTGCGTGGTAGAGCTGTGAATGAATATTACCACAACTCGGGCCAGGAGATGCCAACAGTGGGTTCTCAGCAGCCAAGTATTGCACCAGTACCCATTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGAATTGGCAGTTCCCCTTTTCAAAATGCAATGCCTGGTGGGAATGCGTTAAATGGCATCCCAGGGCATAGTATGCATAACATGTTTAATCCTTCGGTTGGAGGCCCTCCACCTGTTGCTAGTAACTCTTTGGGAAGGCCTCATGTCCCTGATCTGTCACCTGCTGAAATTTACTGTCAACAACATGAAGTTACAGCTACGGGCGACAATGTCCCTCCCCCCTTTATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGTTATTTAATTCCAGCATTTATGATTCTTAGACAGAGGCATAACAATCCCCTGAATGGCCCTACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAAGCCATGAAATTTGGTCGAGCTTCACGGGTCTCCTGCACGTGCTTGTATGGTGGGGCACCAAAAGCTCATCAGCTAAAAGAGTTAGACCGTGGAGCCGACATTGTTGTCGCTACACCTGGCCGTCTCAATGACATACTTGAAATGAAGAAAATCAACTTTGAGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAGATCCGTAAGATTGTGAATGAGATACCACCACGTAGGCAAACTCTTATGTACACAGCAACATGGCCTAAAGAAGTACGAAAAATTGCCGGTGATCTCCTTGTTAATCCTATCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGGGCGCAAGAACGAGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAACATTGGCCGTAATTTTGGTGCTGCTGTAATCCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTGAACCAGTTTAGGACTGGGAAGTCACCAATTCTTGTTGCCACAGATGTTGCTGCCCGGGGTCTTGACATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACATCGTATTGGTCGAACAGGGAGGGCTGGAGCCACTGGACTCTCGTACACCTTTATCTCTGAGCAGGACTGGAAACATGCAGGTGACCTCATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTGCGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGATTCTGGTGGTGGCCGTTGGGAGTCCGGGGGTCGTGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGGTTTGGTGGCCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGTGGTCGTGGTGGTATGAGGGATGGTCCAGGTGTGCAAAGTGGAAGAGGTGATTTCTTTCCTGCTAGGGGGGGCAACAGGAGTCGGGGAATGGGTGGCCCTCGTGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGTGACTCCTATGATCGTTTCAACATGGATGGTCGAGGGCGAGGGCGTGGGCGTGGACGTTTTGACAGCAGAAGAGATGTTGGTTACAGGAGCAGAGGCAGAAGTTACAGTCGCAGCCCTGATAAGGTTCGAACATGGGATTATAGCAGGAGTCGCAGTAGAAGCAGAAGCGGAAGTCGAAGCAGGAGTAGGAGCTGGAGTAGGGGCCGCAGTCGAAGTCGCAGCTGGTCTCGTGGCCGGAGTCGCAGTTATAGCCGTAGCATCAGCCGGAGCCCCAGTCGCAGCCGTGGCCACAGGAGTGGAAGTTACAGCCGCAGTCGTAGTAGAAGCCGCAGCTATGATAGACATGATAGGCCAGATCAACATATTTCTGATCAGAACGAGCATAGAGTGCAAGAAGCAGAAGCCTCTGAACCAAAAACTTTCTCCATGTCTCCGAGGTCCCAGGGGAAGTCACTTCTAGGAACTGAACACGTGGAGCAGACACCAGTTGTAAGTAACGCTGACACAGTTGATTCAGGGGCTGTAGTAGAAGACCCTTCCTTGCCTTCAATCAGTTCCTAA 3456 0.4928 MATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPSPLPAGPPQSVSAPKLAPIPAAHKGQPGVVASQLGQQLLQTSHQQGQQMSHLPQQHSPQVAQVAQQQPSQAAQAGQQQSSQPLQSMPQPGLQQVRQQQMLQPLSQQISPQQMHHQMPQQAVQPQPFGQGVTHDHGSYMGQPQAHQFSHQNLHYMPYSQSMHSNGQQSSQPIQHNMHGQPLENHHEFKAAFPKIEDVDFKNGSQVGLSPSQYQQKSALPLQSNQNIPAGISSVQMPRVGVNAGQAQPFSAMSGGMQQPSAAMQSQQGSADLLYQHGHNFKNQMGPGMMHGQPSNVHPVDPKMGHEDNLRGRAVNEYYHNSGQEMPTVGSQQPSIAPVPISRNQQAYQQDMRIGSSPFQNAMPGGNALNGIPGHSMHNMFNPSVGGPPPVASNSLGRPHVPDLSPAEIYCQQHEVTATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRHNNPLNGPTVLVLAPTRELATQIQDEAMKFGRASRVSCTCLYGGAPKAHQLKELDRGADIVVATPGRLNDILEMKKINFEQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPIQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLARNIGRNFGAAVIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGLSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFDSGGGRWESGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGGFGGRGGMRDGPGVQSGRGDFFPARGGNRSRGMGGPRGGHVGWGRGERDSYDRFNMDGRGRGRGRGRFDSRRDVGYRSRGRSYSRSPDKVRTWDYSRSRSRSRSGSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISRSPSRSRGHRSGSYSRSRSRSRSYDRHDRPDQHISDQNEHRVQEAEASEPKTFSMSPRSQGKSLLGTEHVEQTPVVSNADTVDSGAVVEDPSLPSISS 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01808 1151 MobiDBLite consensus disorder prediction 860 1151 - -
Accr8g01808 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 835 IPR027417 -
Accr8g01808 1151 Pfam WW domain 22 52 IPR001202 GO:0005515
Accr8g01808 1151 MobiDBLite consensus disorder prediction 959 1018 - -
Accr8g01808 1151 SMART ww_5 21 54 IPR001202 GO:0005515
Accr8g01808 1151 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Accr8g01808 1151 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Accr8g01808 1151 MobiDBLite consensus disorder prediction 1044 1063 - -
Accr8g01808 1151 Gene3D - 16 55 - -
Accr8g01808 1151 FunFam ATP-dependent RNA helicase RhlB 690 862 - -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 1072 1100 - -
Accr8g01808 1151 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 481 509 IPR014014 GO:0003724
Accr8g01808 1151 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Accr8g01808 1151 MobiDBLite consensus disorder prediction 51 197 - -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 86 182 - -
Accr8g01808 1151 FunFam probable ATP-dependent RNA helicase DDX17 451 689 - -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 56 70 - -
Accr8g01808 1151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 859 IPR001650 -
Accr8g01808 1151 SMART helicmild6 736 820 IPR001650 -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 1102 1133 - -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 1019 1043 - -
Accr8g01808 1151 SMART ultradead3 500 703 IPR014001 -
Accr8g01808 1151 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 448 859 - -
Accr8g01808 1151 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 632 640 IPR000629 -
Accr8g01808 1151 MobiDBLite consensus disorder prediction 1 27 - -
Accr8g01808 1151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 686 IPR014001 -
Accr8g01808 1151 Pfam DEAD/DEAH box helicase 505 675 IPR011545 GO:0003676|GO:0005524
Accr8g01808 1151 CDD WW 23 53 IPR001202 GO:0005515
Accr8g01808 1151 Pfam Helicase conserved C-terminal domain 712 820 IPR001650 -
Accr8g01808 1151 CDD SF2_C_DEAD 700 829 - -
Accr8g01808 1151 Gene3D - 458 690 IPR027417 -
Accr8g01808 1151 Gene3D - 691 861 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01808 Accr-Chr8 40505621 40512435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01808 469 858 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 1.86e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01808 K12823 - gmx:100807830 1292.33