Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01788 ATGGATATGGAAACTTCAGAAATCAGCGGAGGAAGCTGCAAACTCCAAAACGACGACGAATTGGACCTCCGGCGAGGCCCTTGGACCGTCGACGAAGACCTCACCCTCATCAATTACATTGCCGCTCACGGCGAAGGTCGCTGGAATTCCCTCGCTCGATCCGCCGGGCTCAAACGAACTGGTAAGAGCTGCAGATTGAGATGGCTCAACTATCTCCGGCCCGATGTCCGACGTGGCAACATCACCCTCGAAGAACAGCTTCTGATTCTCGAGCTTCATTCTCGCTATGGAAACAGATGGTCGAAAATCGCGCAGTACTTGCCGGGAAGGACAGACAACGAGATCAAGAACTACTGGAGAACACGAGTTCAAAAGCACGCCAAGCAGCTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTATCTCTGGATGCCCAGGCTCGTCGAGCGTATTCAAGCCTCCTCCTCCGCCTCCGGCGCCGCGGCCACCATCTCCGTTTCTCCCCCTTTATCTACCATCGCCGCCACCGCCACTGCTCCCAATCACGCCCCATACAATTACAACAATTTTGAGTTTGGGCCGGCCGGCGCCTCTCAGGTCACCGGAAGCAACTACACGACGACTGAGAATAGCAGCGCGGCAGCTTCGTCCGAGTCGTTCGGGTCGACTCAGGTGTCGGACTTGACGGAGTATTACTACGGTGGGGTTCCGATTGGGAATACGGGTAACCCTAATCCGGATTACGGTCAAACCGGGGAATTGAGCTACTCGGATAGCATGAGCAGCTTGGATATGCAAACCATGAAGCCAAACAACAGCTGCAGCAACTACCAGTATTGGGGTGGGGACACGTCAGACAATTTTTGGAATGTCGAGAACATGATGTTTTTACAGCAACAGCTCAGTGACAACATGTAA 930 0.5344 MDMETSEISGGSCKLQNDDELDLRRGPWTVDEDLTLINYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRYGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQASSSASGAAATISVSPPLSTIAATATAPNHAPYNYNNFEFGPAGASQVTGSNYTTTENSSAAASSESFGSTQVSDLTEYYYGGVPIGNTGNPNPDYGQTGELSYSDSMSSLDMQTMKPNNSCSNYQYWGGDTSDNFWNVENMMFLQQQLSDNM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01788 309 CDD SANT 93 121 IPR001005 -
Accr8g01788 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Accr8g01788 309 FunFam MYB transcription factor 82 145 - -
Accr8g01788 309 FunFam Myb transcription factor 25 77 - -
Accr8g01788 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 72 IPR017930 -
Accr8g01788 309 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Accr8g01788 309 SMART sant 77 125 IPR001005 -
Accr8g01788 309 SMART sant 24 74 IPR001005 -
Accr8g01788 309 Gene3D - 22 78 - -
Accr8g01788 309 Gene3D - 82 145 - -
Accr8g01788 309 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Accr8g01788 309 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Accr8g01788 309 CDD SANT 27 72 IPR001005 -
Accr8g01788 309 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Accr8g01788 309 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Accr8g01788 309 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01788 Accr-Chr8 40261030 40262414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01788 10 262 MYB Transcription Factor Family AT3G06490 62.162 2.08e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g01788 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01788 K09422 - tcc:18603713 353.599