Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01787 ATGGATATGGATATGGAAACTTCAGAAATCAGCGGAGGAAGCTGCAAACTCCAAAACGACGACGAATTGGACCTCCGGCGAGGCCCTTGGACCGTCGACGAAGACCTCACCCTCATCAATTACATTGCCGCTCACGGCGAAGGTCGCTGGAATTCCCTCGCTCGATCCGCCGGGCTCAAACGAACTGGTAAGAGCTGCAGATTGAGATGGCTCAACTATCTCCGGCCCGATGTCCGACGTGGCAACATCACCCTCGAAGAACAGCTTCTGATTCTCGAGCTTCATTCTCGCTATGGAAACAGATGGTCGAAAATCGCGCAGTACTTGCCGGGAAGGACAGACAACGAGATCAAGAACTACTGGAGAACACGAGTTCAAAAGCACGCCAAGCAGCTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTATCTCTGGATGCCCAGGCTCGTCGAGCGTATTCAAGCCTCCTCCTCCGCCTCCGGCGCCGCGGCCACCATCTCCGTTTCTCCCCCTTTATCTACCATCGCCGCCACCGCCACTGCTCCCAATCACGCCCCATACAATTACAACAATTTTGAGTTTGGGCCGGCCGGCGCCTCTCAGGTCACCGGAAGCAACTACACGACGACTGAGAATAGCAGCGCGGCAGCTTCGTCCGAGTCGTTCGGGTCGACTCAGGTGTCGGACTTGACGGAGTATTACTACGGTGGGGTTCCGATTGGGAATACGGGTAACCCTAATCCGGATTACGGTCAAACCGGGGAATTGAGCTACTCGGATAGCATGAGCAGCTTGGATATGCAAACCATGAAGCCAAACAACAGCTGCAGCAACTACCAGTATTGGGGTGGGGACACGTCAGACAATTTTTGGAATGTCGAGAACATGATGTTTTTACAGCAACAGCTCAGTGACAACATGTAA 936 0.5331 MDMDMETSEISGGSCKLQNDDELDLRRGPWTVDEDLTLINYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRYGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQASSSASGAAATISVSPPLSTIAATATAPNHAPYNYNNFEFGPAGASQVTGSNYTTTENSSAAASSESFGSTQVSDLTEYYYGGVPIGNTGNPNPDYGQTGELSYSDSMSSLDMQTMKPNNSCSNYQYWGGDTSDNFWNVENMMFLQQQLSDNM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01787 311 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Accr8g01787 311 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 23 211 IPR044676 GO:0003700|GO:0006355|GO:0043565
Accr8g01787 311 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Accr8g01787 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Accr8g01787 311 FunFam Myb transcription factor 27 79 - -
Accr8g01787 311 Gene3D - 84 147 - -
Accr8g01787 311 SMART sant 26 76 IPR001005 -
Accr8g01787 311 SMART sant 79 127 IPR001005 -
Accr8g01787 311 CDD SANT 95 123 IPR001005 -
Accr8g01787 311 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Accr8g01787 311 Gene3D - 24 80 - -
Accr8g01787 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 74 IPR017930 -
Accr8g01787 311 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Accr8g01787 311 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Accr8g01787 311 FunFam MYB transcription factor 84 147 - -
Accr8g01787 311 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01787 Accr-Chr8 40261030 40262420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01787 12 264 MYB Transcription Factor Family AT3G06490 62.162 2.55e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g01787 Myb_DNA-binding 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01787 K09422 - tcc:18603713 353.599