Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01688 ATGTCCACACTGGTTGAAGATACAATATTGAGATCCAAGAAAATATCAAAAGGAAGAGCTCCTTGCTGTGACAAGGTTGGTCTCAAAAAAGGACGGTGGACTTCCGAGGAAGACAAAATGTTGACCGACTATATTCAACTTCACGGCGAAGGCTCCTGGAGATCCTTGCCCAAAAATGCAGGGTTATTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTACTTGAGAGAAGACGTCAAGAGAGGCAACATTACTTCTCAGGAAGAGGCCATGATTGTGAAGCTTCATGGTGCCATCGGTAACAGATGGTCTGTAATAGCAAGGCATCTACCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGCGAAGAAAAATATATTGCTTCATGAAACCCTCAACCTCCAACTGTGACACTCTCCCACCGATCGACATTGCTGCTCTGAACGCAGCTGCTTCTTCCAAACGAGGAAGATCAGGTGGTCGAGGCAGGCCAACTCAAGTTCCCATACAAGAGGAGGACAAGAACAATAACAACACTTCAAATCAATACTCGCACTCAGATATGAATGCCCATGACCTGTTTGGGAAAATGCATCAAAGAAAAGAAAACCCAGATGAAGCTGAGGCAATTTCAATTACGGGTTCTAGATCTTGGAGCCAGAATCATCGCCAAGAAGAGACCTTTGATGGAATTGGTTTGGATGCATATTGTGAGATGAGTAGTGGTGATACAAATGGCAAAGCAGGATTTTGCACCAATATGGATGGAGAAGGTGAGGCCTCGGGGCCATTTGAATGGCTAGATGATGAAGTAATGAAACTTAATTACATGTTTGAAAATGGGATGCTTGTGAACCCAACCTGCAGTGAAAATAACAGTATGGAAAGAGAACATGGCTATGGGATGAATCTTCCAACAAGCGAGGATAGTAAAAGTGGTGTTTGGAGCTCAGAATTAAATTACACAGAAAGTGGGGAGTGGCATAACAACAACAACAATAATAATAGTAGCAGTACATCATCAGGGAACTCTGTTTATGATTATCAGTGGACTGTTTGGGATATTTCAGCTAGTGCCCAATCCCATAATCAATGGAACTTGCAGTACTCTGAAGAAAGCCAGATGATGACTTGTTTGTGGGATGCCACTGCAAATGGTGAAGTAAATAACTTCCACTTATGA 1203 0.4239 MSTLVEDTILRSKKISKGRAPCCDKVGLKKGRWTSEEDKMLTDYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITSQEEAMIVKLHGAIGNRWSVIARHLPGRTDNEIKNYWNSHLRRKIYCFMKPSTSNCDTLPPIDIAALNAAASSKRGRSGGRGRPTQVPIQEEDKNNNNTSNQYSHSDMNAHDLFGKMHQRKENPDEAEAISITGSRSWSQNHRQEETFDGIGLDAYCEMSSGDTNGKAGFCTNMDGEGEASGPFEWLDDEVMKLNYMFENGMLVNPTCSENNSMEREHGYGMNLPTSEDSKSGVWSSELNYTESGEWHNNNNNNNSSSTSSGNSVYDYQWTVWDISASAQSHNQWNLQYSEESQMMTCLWDATANGEVNNFHL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01688 400 FunFam Myb transcription factor 27 83 - -
Accr8g01688 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Accr8g01688 400 CDD SANT 32 77 IPR001005 -
Accr8g01688 400 CDD SANT 87 128 IPR001005 -
Accr8g01688 400 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Accr8g01688 400 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 244 - -
Accr8g01688 400 Gene3D - 29 82 - -
Accr8g01688 400 MobiDBLite consensus disorder prediction 176 190 - -
Accr8g01688 400 Gene3D - 87 132 - -
Accr8g01688 400 MobiDBLite consensus disorder prediction 158 190 - -
Accr8g01688 400 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Accr8g01688 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Accr8g01688 400 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Accr8g01688 400 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Accr8g01688 400 SMART sant 29 79 IPR001005 -
Accr8g01688 400 SMART sant 82 130 IPR001005 -
Accr8g01688 400 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01688 Accr-Chr8 39047336 39050694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01688 18 281 MYB Transcription Factor Family AT5G49330 48.485 2.45e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr8g01688 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01688 K09422 - gmx:100805532 362.073