Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01680 ATGAATCTGAGCAACAACGTCAAGGGATCCATGTCAACGGCCAGTTCTAGTTCCGCTCTGAAATCCGGCGGTGACGGCGCCGGTGCCGTCGACCAGTTCCCGGCGGGGTTGCGGGTACTGGTGGTCGACGATGATCCTACTTGCCTTATGATCCTTGAGAAGATGCTTCGTACTTGTTTCTACGAAGTAACAAAATGCAAGAGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGGTTGGAGATGGACCTTCCTGTTATTATGATGTCGGCGGATGATAGTAAAAATGTTGTTATGAAAGGTGTCACACATGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTCCGGAAAAAGAAGAATGAGTGGAAGGATTTGGAGCAATCGTACAATAGCACGGAAGAAGGAGATCGGCAGCAAAAGGCATCAGATGAAGCCGATTACTCATCCTCAGCGAATGAAGGAAACTGGAGAAATGCTAAGAAGAAGAGAGACGAGGAGGAAGACGCAGAGGACAAGGATGATACTTCCACATTAAAGAAGCCACGCGTTGTTTGGTCTGTTGAGCTCCACCAACAGTTTGTAGCAGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGTCTATATCTAAGAAGACTCAGTGGTGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCTGCATTTAATGGAATCGATCTTCAAGCTCTTGCAGCTGCCGGCCAGCTTCCGGCACAGAGTCTGGCAGCACTTCAAGCGGCGGGATTCGGTAGATCAACTGCTAAAGTTGGGGTATCTGTGCCCCTTGTCGATGAGAGGAACCTTTTCAGTTTTGAAAACCCCAGATTGAGATATGTAGATGGGCAACAGCAGCACTTGAGAAGTACTAAACCAACAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTCACCAATTTGCACCAACCGACACAATCCCTTGGTGGCATGAATGTTAATGCATCTACTGCGCAGAGCAACTCTCTATTGATGCCAATGGCTCAATCTCAACCAAGAGGTCAGATGCTCAACGAAAATACCACTTCACATGTTCCAAGACTTCCATTATCTGTTGGGCAGCCTACTGTACCGAATGGAATTTCTAATGCTGCTCTGGGAAGAAATGGGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCAATTCCCCAAACTACTACTTTGATGGCAAGTTTCCCCGCGAACCAAGCTACAGAAATGTCTGCTAGCAGGTTCCCACTCGGAAGCACACCTGGCATATCTGGTATCCCACCGAAAGGCACGTTTCAAGAGGAAGATACCTCAGGAATTAAAGGATCTGGAGGATTTGTTCCAAGTTATGATATTTTCGAGGAACTGCACCAGCAAAAGTCCCATGATTGGGGACAAAATGTGGGCCTCACATCATATGATACCTCACAGTGTGTAAATTTACACGGTAACATTGATGTCTTGCCATCGGTTATAGTACATCAGAGCTTTTCTTCGCCCACCCAACAGACTGGACAGAATAGAGATTCTACTCTGATCGGAAAAGCCATGTACTCCCAAGGGAAAGGTTTGGAACAAGGAAACCTTCAAAATATTGATCAAAACCTTCATCAACTTGTTGAAAATCCTGCAAGGGTCAAGACTGAAATAATTTCTGATGTAAATTCTCATTCTAACTTCTTCCCTGGGCTTTATGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGCCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCATTGGACAACATTCCGGTTTAA 2049 0.451 MNLSNNVKGSMSTASSSSALKSGGDGAGAVDQFPAGLRVLVVDDDPTCLMILEKMLRTCFYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDLEQSYNSTEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEDAEDKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISPQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGFGRSTAKVGVSVPLVDERNLFSFENPRLRYVDGQQQHLRSTKPTNLLHGIPTNMEPRQLTNLHQPTQSLGGMNVNASTAQSNSLLMPMAQSQPRGQMLNENTTSHVPRLPLSVGQPTVPNGISNAALGRNGIAGNNRGAAYNPIPQTTTLMASFPANQATEMSASRFPLGSTPGISGIPPKGTFQEEDTSGIKGSGGFVPSYDIFEELHQQKSHDWGQNVGLTSYDTSQCVNLHGNIDVLPSVIVHQSFSSPTQQTGQNRDSTLIGKAMYSQGKGLEQGNLQNIDQNLHQLVENPARVKTEIISDVNSHSNFFPGLYGQDDLMSALLKQQEAIGAAENEFDFDGYSLDNIPV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01680 682 PIRSF RR_ARR_type-B 10 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Accr8g01680 682 Pfam Myb-like DNA-binding domain 220 270 IPR001005 -
Accr8g01680 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 274 IPR017930 -
Accr8g01680 682 SUPERFAMILY CheY-like 36 160 IPR011006 -
Accr8g01680 682 SMART REC_2 37 149 IPR001789 GO:0000160
Accr8g01680 682 FunFam Two-component response regulator 37 174 - -
Accr8g01680 682 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Accr8g01680 682 CDD REC_typeB_ARR-like 39 153 - -
Accr8g01680 682 MobiDBLite consensus disorder prediction 165 181 - -
Accr8g01680 682 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160
Accr8g01680 682 MobiDBLite consensus disorder prediction 194 214 - -
Accr8g01680 682 MobiDBLite consensus disorder prediction 165 214 - -
Accr8g01680 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 357 IPR045279 GO:0009736
Accr8g01680 682 Gene3D - 215 277 - -
Accr8g01680 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 271 IPR006447 GO:0003677
Accr8g01680 682 FunFam Two-component response regulator 214 277 - -
Accr8g01680 682 Gene3D - 37 174 - -
Accr8g01680 682 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01680 Accr-Chr8 38953229 38956245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01680 71 682 Response Regulator Gene Family AT3G16857 48.799 2.55e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Accr8g01680 Response_reg 3.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01680 - K14491 gmx:100814930 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01680 8 38953229 38956245 Accr8g01680 8 38953229 38956245 ECH