Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01628 ATGGCTACCAATGGCAATGACAAGCCCAATCTCAATTCGTTCGACGCCAATAATGGCTATACATTCAGCGCCAACACCCTCTTCCCCATCACCTTCGTCTTGTTCTTCCTCATCATCCTCCTCATTTTCCTCCACTTCTACGCCCGCTGGTTCCACCGCCGTGCTCTCCGCCAACGCCGCCGTCCATACCTCGTCTTCTATGTCGACTCCGATGCCACCCCACCCACCGGTCTCGATCCCTCTGTCATTCAGTCTCTCCCTGTCTTCGTTTATTCCGCCCACTCCGATCCCGTGGAATGTGCCGTGTGCTTGTCCGATTTCGAAGACAACGAATCGGGTCGGGTTTTGCCCAAATGCAACCACACTTTTCACGTCGAATGCATCGACATGTGGTTCCAGTCCCACTCAACTTGTCCTCTCTGTAGATCTTTGGTTGAGCCCGTCGTCCCGCCCGGGGACCGATCTGGACCGGAAGTTGTGATCGATGTGTGCGAACCGGGTTCGAGTTCAGGGTGTCATCAGGCTGGAGGAGAAGAGAACCGTAGTGGCCGGGTGCTCTGTTCTTCGTCATCTTCGATTGCGTTGAGGCGGAAGCCGTCGTCCGTGGGTGTGGCAATTGACTTGCCGTTGAGCAGAAGCTTCGGGAGAGAGCTGGAGGGGTCGACGACGTCGTTTAGGTCACCGGGGAGTCGTTTGCTATCGTTCAAGAGAATACTGAGCAGAGAGAGGAAGTTAAGTCCTCCGTCCCCATCATCGGAAAACTGTGCCGTTGGATGCAGCTCCGTCTGCGACCGAGATAGAGACGAGTCAATGAGTTGA 819 0.5519 MATNGNDKPNLNSFDANNGYTFSANTLFPITFVLFFLIILLIFLHFYARWFHRRALRQRRRPYLVFYVDSDATPPTGLDPSVIQSLPVFVYSAHSDPVECAVCLSDFEDNESGRVLPKCNHTFHVECIDMWFQSHSTCPLCRSLVEPVVPPGDRSGPEVVIDVCEPGSSSGCHQAGGEENRSGRVLCSSSSSIALRRKPSSVGVAIDLPLSRSFGRELEGSTTSFRSPGSRLLSFKRILSRERKLSPPSPSSENCAVGCSSVCDRDRDESMS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01628 272 MobiDBLite consensus disorder prediction 242 272 - -
Accr8g01628 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 147 - -
Accr8g01628 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
Accr8g01628 272 CDD RING-H2_EL5-like 99 142 - -
Accr8g01628 272 SMART ring_2 100 141 IPR001841 -
Accr8g01628 272 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Accr8g01628 272 FunFam RING-H2 finger protein ATL3 69 147 - -
Accr8g01628 272 Pfam Ring finger domain 99 142 IPR001841 -
Accr8g01628 272 SUPERFAMILY RING/U-box 88 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01628 Accr-Chr8 38412654 38413472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01628 1 244 Rapid Response to Elicitors AT3G16720 44.128 4.90e-59 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01628 - - pcin:129320593 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01628 8 38412654 38413472 Accr8g01628 8 38412654 38413472 ECH