Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01578 ATGGAGGACAACAACAACCTGCTGGGAGGAGCAGGCAGTTCCTCATCATCAATCAATGGAGAGATGATGATAAAGGAACAGGATAGGTTGTTGCCGATAGCGAATGTCGGTCGGATTATGAAGCAAAGTTTGCCGCAGAACGCGAAGATCTCGAAGGAAGCGAAGGAGACTATGCAAGAATGCGTGTCGGAGTTCATAAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGCAAAAAGGAGAGAAGAAAGACCGTTAATGGCGATGACATATGTTGGGCCTTGAAAACCCTAGGCTTTGATGATTATGCAGAGCCACTTCAAAGGTACTTGCATAGATATAGAGAGCTTGAAGTAGATCAACGAGCTAATAATAATTCTAATCATCATCAAGATACAGATCATTAA 405 0.4444 MEDNNNLLGGAGSSSSSINGEMMIKEQDRLLPIANVGRIMKQSLPQNAKISKEAKETMQECVSEFISFVTGEASDKCKKERRKTVNGDDICWALKTLGFDDYAEPLQRYLHRYRELEVDQRANNNSNHHQDTDH 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01578 134 Gene3D Histone, subunit A 20 134 IPR009072 GO:0046982
Accr8g01578 134 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982
Accr8g01578 134 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr8g01578 134 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Accr8g01578 134 FunFam Nuclear transcription factor Y subunit B-3 19 134 - -
Accr8g01578 134 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Accr8g01578 134 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Accr8g01578 134 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Accr8g01578 134 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01578 Accr-Chr8 37907480 37907884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01578 22 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.778 2.14e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr8g01578 CBFD_NFYB_HMF 8.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01578 K08065 - nnu:104599016 191.815