Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01562 ATGGGTTTGTTGAACTCACTGCATTTTGCACTGGCAGTGCTGGTCACCACCACAGCCGCAGCGCTGGCGGCCACGGAAGCCCAGACGAAGCGGGGTTGCAACGATACGTGTGGGAACGTGATCATCCCATATCCCTTTGGCACTAGCAAGAACTGCTACTACAGAGATGAATTATTAGATTTCTTCCTCAACTGCACGACCACCACTTCCCCATCATCATCTGGAGAAGCCACAACAACACAATTGATTTGGGGCGAAAATGTAGAAGTTGTCAGCATCTCCCTGGATCCTCCTGAATTGACTGTATCCGGAGACGTCACCAAGCAATGCAATTATTCATCCGATATTTTATTTTGGAATTCAATGACGTTCGGCGAGTTTTCTATATCAAGCACCAAGAACAGATTCACTGTGGTGGGCTGTGACACCTACGCTTACTTCAGTGACTTGAACAGCACATTTCGCACTGGCTGCTCGTTGAGTTGCAGTAACGAGACGAGGTTTGAGGAAGCAGGGGCATGCTCTGGTGTGGGATGCTGTCAGACCAGTTTCCCTCAAGCCATAAGGAACTATAATATCACCTTATATAGCTTTGACAACTACACGGACGTGCTTGACTTCAACCCTTGCGGCTATGCGTTTGTTGCCAAGGAAGGATCCTTCAACTTCTCCAAACGAGAGCTGCGTGGTCTCAGCAACAGAACACAATTTCCCGTGGTTGTGGACTGGGCTGTTTCCAATCAGACATGTCGTGAAGCCAAGAAAGATGCAAAGAGCTATGCCTGCAAGCAAAACAGTAGATGTAAAGAGTCAGTAAGTGGTATTGGGTACTACTGCGTATGTGAAGATGGTTTCAGAGGCAATCCCTATCTCGATACCGGCTGCAAAGATATTAATGAGTGCGATGGGGACAATCATTGCAATAAGAAATGCCACAACATCGATGGAAATTATACTTGTTTATGTCCATGGGGTTTTAAAGGCAACGGCTATAAAAATGGGTCAGGCTGCAAGTTCCCCTTCACAGAAATTTCACTAGGCTTGCTTGTTATCTTTACATTGGTCTCCATATTATGCTGGGCAAACAAGCAAAGAGCACTAAAGCAACTTAGAAGACAATATTTTGAGCAAAACGGAGGAAATTATATGCTACAACAACTTCATCAACAACAAGGATACACTAATAGAACCAAAATTTTTACTGAAGACGAGCTTAAAATTGCCACAAACAACTTTGATGAGAGTAGAATTCTTGGTCATGGAGGACAAGGCATCGTTTACAAGGGCATATTACCAGATAACTCGCTTGTTGCCATTAAAAAGTCCAGAGTAGGAGGTGACTCAAGACAAGTTAAGGATTTTATCAATGAAGTGACTGTACTCTCCCAAATCAACCATAGGAATGTGGTTAAACTTTTTGGGTGTTGTCTTGAAACTGAAGTTCCCTTGTTGGTTTATGAGTTTGTGGATAATGGCACCCTTCTTGACCATATAGATCCACTAAAGAATGAGCACTCTCTTTCATGGGAGACTCGATTAAGGATAGCAGCAGAAACAGCTGGGGCCATTTCATATTTACACTCTTCCGCTTCCATCCCAATTATTCATCGTGATATTAAATCTACCAACATACTATTAGATCACAATCATATAGCAAAAGTTTCTGACTTTGGAGCTTCAAGACTTGTTCCTCTCAATGAAACTCAAGTTTCTACTGTGGTTCAAGGAACATTGGGATATTTAGATCCAGAGTATCTCCTTACAGGTCAGTTGAATGAGAAAAGTGACGTATATAGCTTTGGGGTTGTGCTTCTGGAGCTAATAACCGCGAAGAAACCATATGAATTCCTTGGGCTAGAACAGAAAAATTTGGCAACATACTTCGCATCATCAATGGAAGAAGGTAGCTTGTTGGAGGTTATTGACAAGCGAGTGTTGAATCAAAAGAATGCAGAGCTGCTAAATGAGGTTGCTTTCTTAGCAAGAAGGTGCATTAGAGTTCATGGAGAGGAAAGGCCAACTATGAAAGAAGTAGCAACAGAATTAGAGGGTGTAATTGCTATGAAAAAGCATCCTTGGGTAAAAGGAGAGGATATGATGTCTAAAGAATGTGAATGCTTGCTTGGTCATGCTGCTGCTAACACTTCAGTTGGTTATGATGGTGCATATGGGAATATTAGTGCTAACACTTTTGCCGCATATGAAAGCATACAAAAGCAAATGGCATTTGAGATTGTAGATGGGCGATGA 2250 0.4258 MGLLNSLHFALAVLVTTTAAALAATEAQTKRGCNDTCGNVIIPYPFGTSKNCYYRDELLDFFLNCTTTTSPSSSGEATTTQLIWGENVEVVSISLDPPELTVSGDVTKQCNYSSDILFWNSMTFGEFSISSTKNRFTVVGCDTYAYFSDLNSTFRTGCSLSCSNETRFEEAGACSGVGCCQTSFPQAIRNYNITLYSFDNYTDVLDFNPCGYAFVAKEGSFNFSKRELRGLSNRTQFPVVVDWAVSNQTCREAKKDAKSYACKQNSRCKESVSGIGYYCVCEDGFRGNPYLDTGCKDINECDGDNHCNKKCHNIDGNYTCLCPWGFKGNGYKNGSGCKFPFTEISLGLLVIFTLVSILCWANKQRALKQLRRQYFEQNGGNYMLQQLHQQQGYTNRTKIFTEDELKIATNNFDESRILGHGGQGIVYKGILPDNSLVAIKKSRVGGDSRQVKDFINEVTVLSQINHRNVVKLFGCCLETEVPLLVYEFVDNGTLLDHIDPLKNEHSLSWETRLRIAAETAGAISYLHSSASIPIIHRDIKSTNILLDHNHIAKVSDFGASRLVPLNETQVSTVVQGTLGYLDPEYLLTGQLNEKSDVYSFGVVLLELITAKKPYEFLGLEQKNLATYFASSMEEGSLLEVIDKRVLNQKNAELLNEVAFLARRCIRVHGEERPTMKEVATELEGVIAMKKHPWVKGEDMMSKECECLLGHAAANTSVGYDGAYGNISANTFAAYESIQKQMAFEIVDGR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01562 749 SMART egf_5 300 338 IPR000742 -
Accr8g01562 749 SMART egf_5 249 296 IPR000742 -
Accr8g01562 749 SUPERFAMILY EGF/Laminin 297 330 - -
Accr8g01562 749 FunFam Wall-associated receptor kinase 2 382 488 - -
Accr8g01562 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 685 IPR045274 GO:0007166
Accr8g01562 749 SMART egfca_6 297 338 IPR001881 GO:0005509
Accr8g01562 749 CDD EGF_CA 297 328 - -
Accr8g01562 749 CDD STKc_IRAK 418 684 - -
Accr8g01562 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Accr8g01562 749 FunFam Wall-associated receptor kinase 2 489 705 - -
Accr8g01562 749 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247
Accr8g01562 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Accr8g01562 749 Pfam Protein tyrosine and serine/threonine kinase 415 682 IPR001245 GO:0004672|GO:0006468
Accr8g01562 749 ProSitePatterns Calcium-binding EGF-like domain signature. 297 320 IPR018097 GO:0005509
Accr8g01562 749 Gene3D Transferase(Phosphotransferase) domain 1 489 703 - -
Accr8g01562 749 ProSiteProfiles Protein kinase domain profile. 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g01562 749 SMART serkin_6 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g01562 749 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Accr8g01562 749 Coils Coil 643 663 - -
Accr8g01562 749 Gene3D Laminin 248 331 - -
Accr8g01562 749 SUPERFAMILY Protein kinase-like (PK-like) 392 688 IPR011009 -
Accr8g01562 749 FunFam Wall-associated receptor kinase 2 248 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01562 Accr-Chr8 37598665 37602432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01562 9 749 Receptor kinase-like Gene Family AT1G21230 44.141 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Accr8g01562 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01562 - - pcin:129293718 740.725