Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01543 ATGTTCAGTCCGAGCATGGATTCTAGGAGGGACACGGGAGGTGTTGCAGGCACGGTTCTAATCCCGATGCGGTTTGTGTGGCCGTATGGGGGAAGAAGTGTGTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGCTTCTACCAATGTCGCCTGTCGAGGGTTGCCCAACTGTATTTCAAGTTATTTATAGCTTGACCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGAGACACGATGAGCATCAACCTTATGTACCTGGAGAATATGGGATAGTTAACACTGTCATGTTGGCTACTGATCCTAATTTCATGCCTGTTGTAACACCAGACCCAACTGGATCAAACATGGATGTGGATAATGAGGCTTTTCGGCGTGTGGTCCGCTTGACAGATAGTACGTTGACTGAAGTATTGCCGAGAATATCTGATGCCGATGTCCAGATATCCCGTCAGCGCATTACTGCATTCTTGACCACACACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGACATGGAACTGCCAGTGAAACAAGCGTTTCACATTTTGCATGAGCAGGGAATCCCTATGGCTCCTCTATGTGACTTCAGCAAAGGGCAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTTATTTTAATTTTGAGAGAGCTTGGAAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAGCAGACAAAACAATGGACCAGGAGCAGCATTTTCAAGACGTTTTGTTAGTGCTGGGCCGTATGATAATTTAAAGGATGTTTCCTTGAAGATCCTGCAAAATGGAGTTTCAACTGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTTCACAGTTATTACATCTAGCTTCACTTTCTGGAATTCTTAAATGCATTTGCAGGTATTTTAGGCATTGTGCCAATACATTGCCTATTCTTCAACTACCCATTTGTGCAATTCCAGTTGGCACATGGGTACCCAGAATTGGGGAGTCAAACACCTTGGCAATGTTGAGACCAAGTGCTTCTCTTGCTTCAGCCCTAAATTTGTTAGTCCAAGCCCAAGTAAGTTCAATACCAATAGTTGACGATAATGACTCATTATTGGATATATATTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCGTTGCAATTGGGTCAGGATTCTTATCAGCCTTATGAACTTAGAAGTCAAAGATGTCAGATGTGCTTGCGATCTGATTCTCTCCATAAAGTGATGGAACGGCTGGCTAATCCAGGTGTTAGGCGGCTAGTCATCGTGGAAGCTGGCAGCAAACGTGTAGAAGGCATTGTTTCACTAACTGACATATTCAAGTTCTTGCTTGGTTAG 1464 0.4296 MFSPSMDSRRDTGGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVMLATDPNFMPVVTPDPTGSNMDVDNEAFRRVVRLTDSTLTEVLPRISDADVQISRQRITAFLTTHTAYELLPESGKVVALDMELPVKQAFHILHEQGIPMAPLCDFSKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLSRQNNGPGAAFSRRFVSAGPYDNLKDVSLKILQNGVSTVPIIHSSSEDGSFSQLLHLASLSGILKCICRYFRHCANTLPILQLPICAIPVGTWVPRIGESNTLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYQPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLTDIFKFLLG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01543 487 SUPERFAMILY CBS-domain pair 353 486 IPR046342 -
Accr8g01543 487 ProSiteProfiles CBS domain profile. 352 408 IPR000644 -
Accr8g01543 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 149 485 - -
Accr8g01543 487 Gene3D Immunoglobulins 21 111 IPR013783 -
Accr8g01543 487 ProSiteProfiles CBS domain profile. 433 487 IPR000644 -
Accr8g01543 487 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Accr8g01543 487 CDD E_set_AMPKbeta_like_N 22 99 - -
Accr8g01543 487 SUPERFAMILY CBS-domain pair 156 326 IPR046342 -
Accr8g01543 487 SMART cbs_1 175 224 IPR000644 -
Accr8g01543 487 SMART cbs_1 267 321 IPR000644 -
Accr8g01543 487 SMART cbs_1 437 486 IPR000644 -
Accr8g01543 487 SMART cbs_1 355 403 IPR000644 -
Accr8g01543 487 Gene3D - 342 487 IPR046342 -
Accr8g01543 487 SUPERFAMILY E set domains 21 102 IPR014756 -
Accr8g01543 487 Pfam CBS domain 357 399 IPR000644 -
Accr8g01543 487 Pfam CBS domain 440 486 IPR000644 -
Accr8g01543 487 Gene3D - 146 329 IPR046342 -
Accr8g01543 487 ProSiteProfiles CBS domain profile. 169 231 IPR000644 -
Accr8g01543 487 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01543 Accr-Chr8 37089364 37095908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01543 11 111 Protein tyrosine phosphatase (PTP) family AT3G01510 30.769 1.80e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01543 - - gmx:100785692 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01543 8 37089364 37095908 Accr8g01543 8 37089364 37095908 ECH