Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01541 ATGGAGCGGTTCGGCCGGGCAAGCGACGAGTCGCAGTCCGATCCGCCACCGGAATGGACTGGAACCGGAGGCGAAACGGGGCTTGAAGAATCTATGCGGCAATTCGGATTGGCTGGTGAGGAATCGTATCCACAACGGCCCGATGAGCCTGATTGCATCTACTATTTGAAGACTGGGTTTTGTGGGTATGGCTCGCGGTGTCGATTCCATCATCCCCGTGACCGTGGCGCGGTTATAGGAGCTTCGATGACTGGTGTGGAGTATCCAGAGCGAGTAGGCCAGCCTTTATGTCAGTATTTTATGAGGACAGGATCTTGCAAATATGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCCTGTGCCACTTAATTATTTTGGATATCCATTACGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGCACATCTTGTAAGTTTCACCACCCGCAGCCTGCTGGTGTTCAAGTTCCTGCCCCATTACCAGTTCCCCATGCTTCAACTCTACCTGTACGAGTACCTTCACCATTCTATCCAACTATGCAGCCTCCATCTGGTTCTTCATCACAACAATATGGTGTAATGTTTGCTAGACCACCTCTACTACCAGGGTCATTAGTGCAAAACCCTTACGGGCCTGTGGTAATGTCACCTGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAGGCCCTGCAGTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACACAATTTTATGCGAATACCCAGCTACCTTCACCAGCACCTGCCTATTCTGCACCATATCAACCTCTAGGTTCCTCATTTGGCCCCTCAATCACTAGTCCAAGAGAACAACATTCATTTCCAGAAAGACCCGGTCAACCAGAATGTCGGCATTACATGAGAACAGGGGAGTGTAGATTTGGTCCTTCCTGTAGATATCATCATCCACCTGAATTGATTGCACCAAATGTAAATGTGGTCCTTAGTCCTGGGGGTCTTCCTATGCGCCCGGGGGCACCACCTTGCATTCATTATGCACAGCGGGGAGTATGTAAGTTTGGTCCTGCATGCAAGTTTGATCATTCTATGGGAGCGTTGACTTACAGTCCATCTGCATCTTCCCTTAATATGCCGGTTGTATCCATTCCTGCGGGCTTGTCCATCAGTTCTCTTGCACCATCGACTTCATCATCGGAGTTGCAGCCTGAACTTAGCCCTGGTTCAAGCGAGGAGCACGGATTGTTTAGAATGTCTTCATCAATGAGCACATCCACTGGACCAGTTGGCTTAGCTTCATCATCTGGTGGAACCGTTTCTCAGTCAGATGCTCAAACATCCACCCAAAGTTCTGCTTCGGCAGCAACTCCCACGATCACAACAAGCAGTGCTATCTCTCATACCCCAAGCTAA 1440 0.4917 MERFGRASDESQSDPPPEWTGTGGETGLEESMRQFGLAGEESYPQRPDEPDCIYYLKTGFCGYGSRCRFHHPRDRGAVIGASMTGVEYPERVGQPLCQYFMRTGSCKYGASCKYHHPRQGGGVAPVPLNYFGYPLRPDEKECSYYVKTGQCKFGTSCKFHHPQPAGVQVPAPLPVPHASTLPVRVPSPFYPTMQPPSGSSSQQYGVMFARPPLLPGSLVQNPYGPVVMSPVPFSGWNPYQAPTGPAVPSSTPSNVGSTQFYANTQLPSPAPAYSAPYQPLGSSFGPSITSPREQHSFPERPGQPECRHYMRTGECRFGPSCRYHHPPELIAPNVNVVLSPGGLPMRPGAPPCIHYAQRGVCKFGPACKFDHSMGALTYSPSASSLNMPVVSIPAGLSISSLAPSTSSSELQPELSPGSSEEHGLFRMSSSMSTSTGPVGLASSSGGTVSQSDAQTSTQSSASAATPTITTSSAISHTPS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01541 479 Gene3D - 124 171 - -
Accr8g01541 479 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Accr8g01541 479 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Accr8g01541 479 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Accr8g01541 479 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Accr8g01541 479 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Accr8g01541 479 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Accr8g01541 479 Gene3D - 290 375 - -
Accr8g01541 479 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Accr8g01541 479 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Accr8g01541 479 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Accr8g01541 479 MobiDBLite consensus disorder prediction 422 479 - -
Accr8g01541 479 SUPERFAMILY CCCH zinc finger 349 376 IPR036855 GO:0046872
Accr8g01541 479 SUPERFAMILY CCCH zinc finger 304 328 IPR036855 GO:0046872
Accr8g01541 479 MobiDBLite consensus disorder prediction 284 305 - -
Accr8g01541 479 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Accr8g01541 479 MobiDBLite consensus disorder prediction 401 479 - -
Accr8g01541 479 MobiDBLite consensus disorder prediction 401 415 - -
Accr8g01541 479 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Accr8g01541 479 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Accr8g01541 479 MobiDBLite consensus disorder prediction 1 45 - -
Accr8g01541 479 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Accr8g01541 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Accr8g01541 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Accr8g01541 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Accr8g01541 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 373 IPR000571 GO:0046872
Accr8g01541 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Accr8g01541 479 Gene3D - 42 120 - -
Accr8g01541 479 PANTHER PROTEIN PHOSPHATASE RELATED 34 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01541 Accr-Chr8 37078240 37082934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01541 1 420 C2H2 Transcription Factor Family AT5G18550 53.425 5.13e-142 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g01541 zf-CCCH 3.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01541 - - gmx:100778426 632.484