Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01526 ATGGAAGGCTATGACATTGAACGTCTTGGTTTTGGGAAGAAGGGATATGGGTGCAAGCACTATAGGAGAAGATGCAAGATTCGGGCACCTTGCTGCAACGAACTGTACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAAGAACCCCTTTGATCGACACGAAATGGTTCGTCAAGATGTGAAACAAGTTGTTTGTTCCGTTTGTGATACAGAGCAGCCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTCGATGATGATACGGAGAAACAGCAGTTTCATTGTGATGATTGTGGAATCTGCAGAATTGGTGGTCGTGATAATTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCACTTGGTCTACTTGATAATCATTTATGCGTAGAGGACTCCATGAGGCATCACTGTCCTATATGTTATGAGTACCTTTTTGATTCAGTGAAGGACACTACAGTTATGAAATGTGGTCACACAATGCATAGTGAATGTTTCCAAGAGATGATAAAACGTGAAAAGTATTGTTGCCCCATATGCTCCAAGTCAGCCATTGACATGTCCATGATGTGGAAGATGATTGACGAAGAGATTGAAGCAACTCTCATGCCTGAAGATTATCGGCACAAGAAGGTTTGGATACTGTGTAATGACTGTAATGACACAACGGAAGTGTACTTCCACATAGTAGGGCAAAAATGTGGGCACTGCAGATCCTATAACACTCGTGAAATTGCTCCCCCTGTTCTTCCTCAATGA 804 0.4291 MEGYDIERLGFGKKGYGCKHYRRRCKIRAPCCNELYSCRHCHNEATSMLKNPFDRHEMVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNTCKFFDDDTEKQQFHCDDCGICRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHSECFQEMIKREKYCCPICSKSAIDMSMMWKMIDEEIEATLMPEDYRHKKVWILCNDCNDTTEVYFHIVGQKCGHCRSYNTREIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01526 267 SUPERFAMILY RING/U-box 152 204 - -
Accr8g01526 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Accr8g01526 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Accr8g01526 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Accr8g01526 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Accr8g01526 267 SMART ring_2 153 195 IPR001841 -
Accr8g01526 267 CDD RING-H2_Pirh2-like 152 196 - -
Accr8g01526 267 Gene3D - 226 262 - -
Accr8g01526 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Accr8g01526 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Accr8g01526 267 SUPERFAMILY CHY zinc finger-like 14 87 IPR037274 GO:0008270
Accr8g01526 267 Pfam Ring finger domain 152 195 IPR001841 -
Accr8g01526 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Accr8g01526 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Accr8g01526 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01526 Accr-Chr8 36925920 36929312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01526 13 266 C2H2 Transcription Factor Family AT3G18290 41.923 3.17e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01526 K10144 - gmx:100792038 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01526 8 36925920 36929312 Accr8g01526 8 36925920 36929312 ECH