Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01519 ATGCTGATGATGTCAGGGGGAATCAACACTTATGTTGGGAAACTGAGATCAAATTTTCTGCGAACCAAGTTCACAATTTATGATGGCCAGCCACTTCACAAATGGGCAAAGACTACAAAAAGCCGCTCTGTTAAACACGGGAATCTAAATCAAGTTTCACCCAAGGTTTCTACTGGTAACTATCCAGTGGCACACATCTCATATGAGCTAGGCTCCAGGAGTCCAAGGAGAATGAAATGTGTCATGGACACCATTCCTGCCTCTGCAATTCAACCCGGAGGGGTGGGGGTGGGGCAACCTGTACAGACTGAGTTTTCTCCGAGCAATGCAGAAAAGGTTCCATTGTTCCCATTTTTTAGGTCAAAATCAAATAGAATTGAAAACTCTGTATCTGGATCCCCGGGCAGTGATAAGGTGCTAGTGTTAAAAAGTAAGCCTGCATGGTGGTCTGAGCGGTTCGGATGTTGGTGTTGGAACCTCAAAGGAAGAGTGAAAGTTCGTTCAGTTAAAAACTTTCAGCTGGTGGCATCCCCAGAAAATGGACCTTCTGGAGAAGAACATGAGAAGATCATCCTTCAATTTGGGAAAGTAGGGAAGGATTTGTTTATCATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTCTGCAATATGCCTCAGCAGCTTTGAAACCCAAATTCTTTAG 687 0.444 MLMMSGGINTYVGKLRSNFLRTKFTIYDGQPLHKWAKTTKSRSVKHGNLNQVSPKVSTGNYPVAHISYELGSRSPRRMKCVMDTIPASAIQPGGVGVGQPVQTEFSPSNAEKVPLFPFFRSKSNRIENSVSGSPGSDKVLVLKSKPAWWSERFGCWCWNLKGRVKVRSVKNFQLVASPENGPSGEEHEKIILQFGKVGKDLFIMDYQYPISAFQASAICLSSFETQIL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01519 228 PANTHER TUBBY-RELATED 6 227 - -
Accr8g01519 228 Pfam Tub family 7 225 IPR000007 -
Accr8g01519 228 SUPERFAMILY Tubby C-terminal domain-like 6 226 IPR025659 -
Accr8g01519 228 Gene3D Tubby Protein; Chain A 3 224 IPR025659 -
Accr8g01519 228 PRINTS Tubby superfamily signature 11 35 IPR000007 -
Accr8g01519 228 PRINTS Tubby superfamily signature 142 159 IPR000007 -
Accr8g01519 228 PRINTS Tubby superfamily signature 208 228 IPR000007 -
Accr8g01519 228 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Accr8g01519 228 PRINTS Tubby superfamily signature 57 84 IPR000007 -
Accr8g01519 228 PRINTS Tubby superfamily signature 187 206 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01519 Accr-Chr8 36863321 36864244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01519 4 227 TUB Transcription Factor Family AT2G47900 61.739 3.85e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr8g01519 Tub 1.6e-64 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01519 K19600 - gmx:100815464 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g01519 8 36863321 36864244 Accr8g01519 8 36863321 36864244 ECH