Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01483 ATGGGTTGCGGCAATGGGGAAATTGAGCTTGGTTTCTCAGTTCTCTCTCACGGTGCTGATGATATTCATCTAACAGATGTGAGGGAGAACTTGTTTTCAGAAAAATTTTCCAGACAGTCTCATGTAGCTCAACTGAAGAATCCATCTTCATGTTGTTTGAGATCAATATTTTCCACAGCGAGAAGCCCCGAATCCACATCCCTCCGGTCCTGTAATATTCCGCCAGCGGCCACTGGTCTCTTGCCTGAAATGCTGCAGCAGAGACAAGAGAATGAACACGAGGCCATAGTTAGAGCAATTCTTCATGTTATATCTTCCCCTTCTTCTTCAACTTCCAATAGTTCATCCTTTCATCACCAAAATCTGCCTAATATTATACATCCAGAAGCAGGAACTAGTGCTTTTACGAGGTACAGACCTAATTCAGAAATGAGTTCCAAATTTCCCAGTTTGAGCAAGAACAAGCAACAAAGCTTGCTCAAGAGATCATTCGAATTGCTCGGAGGCTTACATTACATGAGAAATATGAGACAGCGTTATCAAGCAATAAGTCCTCCCACTAGAGCCCACCTCCTCCATGTCATCTCTGAACGAAGAAGACGTGAGAAGCTAAACAAGAACTTTGAGGCACTTAGGTCACTACTCCCACCAGGAACCAAGAAAGACAAAGGTTCAATACTTACAGCAGCAAAGGAGACATTGACCTCTTTGATGGCTGAGATTGAAAAGATGACCAGAGGAGATCATCAGCAAGCGAAGGCACAAATGAAAGCCAAGAAATTATTGTTAAGAGATCAAGAAACGAAAACCAGTAGTACCTCCACTACTGAAAGATTGAGGGTGAGAGTCTCAGAAGTGGGAGGGTCGAGCTCATCAGAGGAAAGATTCATGGACCTGCAAGTGACTGTGAGAGGACGAAGCTATTATAACTCTCAGGTCCAGATATTGATTCGCCTATTGGAATTCTTGAAAGGAGTTCAGGGAGTTAGCTTAGTTTCTGTGGACGCTAACACACATATAGCACAAGAAGGAGCCGCCTTTAGTGAAGCAACTTTGACACTCAAGATAGAGGGGAGCGAATGGGATGAGGCTGCCTTCTGTGAAGCAGTGAGAAGGGTGGTTGCTGACCTGGCAGAGTGA 1140 0.443 MGCGNGEIELGFSVLSHGADDIHLTDVRENLFSEKFSRQSHVAQLKNPSSCCLRSIFSTARSPESTSLRSCNIPPAATGLLPEMLQQRQENEHEAIVRAILHVISSPSSSTSNSSSFHHQNLPNIIHPEAGTSAFTRYRPNSEMSSKFPSLSKNKQQSLLKRSFELLGGLHYMRNMRQRYQAISPPTRAHLLHVISERRRREKLNKNFEALRSLLPPGTKKDKGSILTAAKETLTSLMAEIEKMTRGDHQQAKAQMKAKKLLLRDQETKTSSTSTTERLRVRVSEVGGSSSSEERFMDLQVTVRGRSYYNSQVQILIRLLEFLKGVQGVSLVSVDANTHIAQEGAAFSEATLTLKIEGSEWDEAAFCEAVRRVVADLAE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01483 379 SMART finulus 194 243 IPR011598 GO:0046983
Accr8g01483 379 Pfam Helix-loop-helix DNA-binding domain 193 237 IPR011598 GO:0046983
Accr8g01483 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Accr8g01483 379 Coils Coil 249 269 - -
Accr8g01483 379 Gene3D - 185 256 IPR036638 GO:0046983
Accr8g01483 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 250 IPR036638 GO:0046983
Accr8g01483 379 CDD bHLH_AtbHLH_like 193 244 IPR045239 -
Accr8g01483 379 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 34 376 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01483 Accr-Chr8 35951805 35955191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01483 1 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.824 9.10e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr8g01483 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01483 - - pcin:129308826 377.096