Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01481 ATGGAACCTCGTGTTGGAAATAAGTTTCGGCTTGGCCGCAAGATCGGCAGCGGTTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAAACTAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGCTGTTGTATGAGTCCAAGCTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGACTATAATGTTCTGGTGATAGATCTTCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGGAAGCTATCACTGAAGACAGTTCTCATGCTTGCGGATCAAATGATCAACCGAGTTGAGTTTGTTCATTCTAAATCATTCCTACATCGGGACATCAAACCAGATAATTTTCTTATGGGTTTAGGAAGGCGTGCAAACCAGGTTTATGTTATTGACTTTGGTTTGGCTAAGAAATATAGAGATAGTTCAACTCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATACGCTAGCATGAACACTCATCTTGGCATTGAGCAAAGCCGAAGAGATGATCTAGAGTCTCTTGGTTATGTCCTCATGTACTTTCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCTGGCACCAAGAAACAGAAGTATGAGAGAATCAGTGAAAAGAAGGTTTCTACCTCAATTGAGGCCTTGTGCCGAGGTTATCCATCAGAATTTGCTTCTTATTTCCATTACTGCCGATCATTAAGATTTGATGATAAGCCAGATTATGCTTACCTGAAAAGGATATTCCGTGACCTCTTTATTCGGGAAGGCTTCCAGTTTGACTATGTCTTTGACTGGACTATCTTAAAGTATCAGCAATCACAGCTGGCTACTCCTCCTGCACGTGCCCTTGGCCCAAGTGCTGGAACTAGTTCTGGAATGCCCCCTGTTGTGGCTAACGCTGATAGACAGACAGGAGGGGATGAAGGGCGAACACCGGGTCTTGTTTCGATGGATTCTATGAGGCGAAAAATGTCAGGCCCCATATTGAATTCTTCTCCAAGTAACCATATTTTGGGCCAGTCAAGTGGGTCATCTCGGCGAGTTGCTGTTCCCAGTAGCCGCGATGCATTTGTTGGTGGGGAGTCAGATCCCCGTACTCGCACTACGGAAGCTAGCCCTGGAGCTGCTCACAGAATTTCAGGTGGCCATCGAAGTTCACCACTGGGAGCTACAGATGCAAAGAGAATTTCTTCTGGAAGAAATGCTTCTCATGTCAAGAATTATGAATCTACTGTTAGGGGCATTGAAGGCTTGCAATTAGAGAATGATGAGAGGGCCCACTATTAA 1362 0.4405 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARALGPSAGTSSGMPPVVANADRQTGGDEGRTPGLVSMDSMRRKMSGPILNSSPSNHILGQSSGSSRRVAVPSSRDAFVGGESDPRTRTTEASPGAAHRISGGHRSSPLGATDAKRISSGRNASHVKNYESTVRGIEGLQLENDERAHY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01481 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Accr8g01481 453 CDD STKc_CK1_delta_epsilon 8 282 - -
Accr8g01481 453 FunFam Casein kinase I isoform delta-like 1 308 - -
Accr8g01481 453 MobiDBLite consensus disorder prediction 350 374 - -
Accr8g01481 453 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Accr8g01481 453 FunFam Putative Casein kinase I 1 85 - -
Accr8g01481 453 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Accr8g01481 453 PANTHER CASEIN KINASE-RELATED 9 370 - -
Accr8g01481 453 MobiDBLite consensus disorder prediction 304 428 - -
Accr8g01481 453 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g01481 453 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g01481 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Accr8g01481 453 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01481 Accr-Chr8 35892956 35898693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01481 7 223 EF-hand Containing Proteins AT2G17890 25.778 1.27e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Accr8g01481 Pkinase 4.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01481 K02218 - gmx:100785851 836.254