Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01477 ATGAGCGGAGACGCCACCCATTGGGATGAAAATGCTTACAGAGAAGCCATATTGAAGGAGAGGGAGATTGAAACCCGAACCGTCTTTAGGACCGCTTGGGCTCCCACCCGAAACCCTAACCCTGATACCCTCCTCGTCGCGTCCAGCGACGGATCCATCGCCTCCTATTCTATCCCTTCTTGCATCTCCAACCTTCCGTTTGGTTTTACCAACATAAAGACACAAAAATTGTTTGCTGAACCAACTTGCTTCTTTCAAGGGCACGATGGACCTGCTTATGATATCAAGTTTTACGGGGACGATGAAGATTCCCTGTTATTGAGTTGTGGCGATGATGGTCGGATACAAGGATGGAGATGGAAGGAACTTACAGGATCAAAGGATTCATCATCTTTGCTCGGAGGTGATATCAAGCCTTTGCTTGATCTGGTGAATCCTCAGCACAAAGGTCCTTGGGGTGCCCTTTCTCCTATTCCTGAGAATAATGCTATTGCTGTTGATACCAAGGGAGGATCTGTGTTTGCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAACTGTATTTAAGGGGCACTTGGACTACTTGCATTGTTTAGTTGCCCGAAACTCAGCCAGTCAGATTATAACAGGTTCAGAGGATGGGACTGCACGAATTTGGGATTGCAAGAGTGGAAAGTGTATCAAATTGATTGATCCTGCAAAAGATTTGAAGTCAAGAGGACTAGTTAAATGGATAAGTAGTGTCGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGTAGCTATGGTCGGAATATATCGCTTTGGAACCTTCCTGCTTCAGAATGCATAACAAAATTTTCAACGGGTTCTTCTGTGCAGGACATGTTATTTGATAACAATCAAATACTGGCAATTGGGGCAGATCCTCTACTTAATCGATTTGACATGAATGGTGTGACCCTTTCACAAATACACTGCGCTCCTCCGTCTTCTTTTACTATCTCCTTACATCCATCAGGGGTCATGGCAGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCCCAATTTGGAAGCCACATGTGCACATTTCGCTGCCGAAGTCTTTAA 1113 0.4474 MSGDATHWDENAYREAILKEREIETRTVFRTAWAPTRNPNPDTLLVASSDGSIASYSIPSCISNLPFGFTNIKTQKLFAEPTCFFQGHDGPAYDIKFYGDDEDSLLLSCGDDGRIQGWRWKELTGSKDSSSLLGGDIKPLLDLVNPQHKGPWGALSPIPENNAIAVDTKGGSVFAASGDSCAYCWDVETGKVKTVFKGHLDYLHCLVARNSASQIITGSEDGTARIWDCKSGKCIKLIDPAKDLKSRGLVKWISSVALDASESWLACSYGRNISLWNLPASECITKFSTGSSVQDMLFDNNQILAIGADPLLNRFDMNGVTLSQIHCAPPSSFTISLHPSGVMAVGGYGCLVDVISQFGSHMCTFRCRSL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01477 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Accr8g01477 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 368 IPR042626 -
Accr8g01477 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Accr8g01477 370 SUPERFAMILY WD40 repeat-like 33 356 IPR036322 GO:0005515
Accr8g01477 370 Gene3D - 6 154 IPR015943 GO:0005515
Accr8g01477 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Accr8g01477 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Accr8g01477 370 SMART WD40_4 14 57 IPR001680 GO:0005515
Accr8g01477 370 SMART WD40_4 231 277 IPR001680 GO:0005515
Accr8g01477 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Accr8g01477 370 SMART WD40_4 280 316 IPR001680 GO:0005515
Accr8g01477 370 Gene3D - 155 360 IPR015943 GO:0005515
Accr8g01477 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01477 164 233 Eukaryotic Initiation Factors Gene Family AT2G46280 31.429 5.12e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01477 - - gmx:100806423 604.749