Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01450 ATGGCTGACGTACAAACCCCCTTAATCCTCTCATCATCATCACCACCTCCTCCACCGTCGCCGCCGCCGTCTTCTTCCCCGAATTCCGGCATGACCATGCTGTACTACAGCCTGGCGGTGGTCGGCACGGCGGCCATAGTGTTAGCCATTTACAACCTCATCATCATTAGGCGGTGCAGCCGCAGCCGCCAGAACGGGCGAGGGGTGGGGGACAACCGGGCAGTGGAGGTGGTGATGGGGGCGGCCGGAAGTAGTAGCCGTAGCTTTGAATGCTCAAATAGGAACCTACTTTCAAGCTTCAGGTATAAGAAAGAAGTAGAAGAGAAAGAGGAGTATGAATGCCCAGTTTGCTTGTCAGTGTTTGAAGATGGTGAAGAAGTGAGGAAGCTCCCTGGCTGTAATCATTCGTTTCATGTTATTTGTATAGACATGTGGCTTTATTCTCACATGGATTGCCCTGTTTGTCGAACACCTGTTGGATTAATAGAGCGAGATTGA 498 0.5141 MADVQTPLILSSSSPPPPPSPPPSSSPNSGMTMLYYSLAVVGTAAIVLAIYNLIIIRRCSRSRQNGRGVGDNRAVEVVMGAAGSSSRSFECSNRNLLSSFRYKKEVEEKEEYECPVCLSVFEDGEEVRKLPGCNHSFHVICIDMWLYSHMDCPVCRTPVGLIERD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01450 165 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Accr8g01450 165 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 159 - -
Accr8g01450 165 CDD RING-H2_EL5-like 114 156 - -
Accr8g01450 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
Accr8g01450 165 MobiDBLite consensus disorder prediction 1 27 - -
Accr8g01450 165 MobiDBLite consensus disorder prediction 11 26 - -
Accr8g01450 165 SUPERFAMILY RING/U-box 103 161 - -
Accr8g01450 165 FunFam RING-H2 finger protein ATL1 76 161 - -
Accr8g01450 165 Pfam Ring finger domain 113 156 IPR001841 -
Accr8g01450 165 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01450 Accr-Chr8 35430010 35430507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01450 10 161 C3H Transcription Factor Family AT2G20030 32.919 3.61e-19 81.3