Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01424 ATGTGTTTGTCGTTATTATCAGAGACTGCGGCGGAGGAGCAGAGAGAGACGACGACGACCATGACAGTGACAGACGGACAAACCTCCAAGGTCAGGAGGACCGAGATTGCGCCATGCTTGACGTGTCCTTTGTGTAATGATTTCTACAGAGAAGCCACCACTATTTCAGAATGCATGCACACTTTTTGCAAGGAATGCATATGGGAGAAGTTCAGAGCTCAGTGTGAGACGCATTGTCCAGTATGTGATATAGACCTTGGTACTTATCCACTTGAGAGGACAAGGCCAGACCCTTCTCTTCAAGATTTGAGGGATAAAATTTTCCCTCATGAGGAAAAAAGTGCCAAGGCACCTGATAGTGTGCCTTCCGATACCAAGAAAAAGGAGAGATCTGTCTCTTCATTAGGCACCAGTCCAAAACCTAAGCTATCAAGCCATTCTTCTTTAGTTGAAAGAAGGGCAAAAAAAGCAGCGAAAAAATTTTTGGATGAACAAGAATCTGCTCTTGCTGCCTTTCAATTGGAGAAAAGATCAGCTGGTAAGAAACATGGGAGACCGAATGGCGTAGCAATTTTGGAAGGCTGTGCTAAGAATTCATCAAGAACAAAATCTGTAGCGAGGAAAAAACCCATTCCACAAGAATACATCGCCTCTACTAGTCAACCTCAGTCTCAGAAAGTAGCCGGAGATAACAAGAAAAGCCAGGAACACAGTCCTATTCCAAAAGAATACGTTCCCTCTGCTAGTCAACCTCAGCCTCAGCAAGTAGCAGGAGATAACAAGGCAGACAAGGAACACAGTGAGCTTGAAACTGAAAATGTGACAAGTGAAATTGAGAATCAGAAGACTTCCTTAGAATCAGATTTGAACCAGCAAGAAGTGCCTAATGAAACTTCTGAGAAAAATGCTGTGTTATGGAAAGGAAAAGCTCCCATGTGGGAGCCCTTGAACTGCCTTATGGAAGCTGCAGAAAAAGCAAAGTCTTCAGAGTCCAACAATATGCAAGAAAATGCTAATTTTGCAGTGCCAGTTGAATCTTGCAACAATGACTCCAATACTACCAAAATTATGGCAGCCAGTGATCGAAATAAGGCAACCAAAATTATGGCAGCCAGTGATCAAAATGAGGCAACTCCGGTTCAACCTGATCCCATCAAAACTAAGGGGTTGGGGATCAAACATAAAAGAAGAGTCAAACTTGCTCAAGACTTGAATGTTCCTGCAGAACCTGTACCTACTGGTTCGAGCAGCCAAAGCAATGAAAGAATAATTCCAATATGGTTCTCATTAGTTGCTTCTGAAGAGGGGGATGTATGTGCACGCTTGCCACAGATACCTTCCCGCCACCTGAGGGTCAGGGATGTCAATTTACCTATTGCATTCATCAAGAAGTATATAGTGAAGAAGCTTGATCTTGCAAGCGAAGCAGAGGTGGAAATCTCATTAAGTGGGAAGCCATTGTTGCCTTCACTGCAACTGAAGGACGTAGTAGAGATGTGGTTAAAGACAGTGCCAAAGTCTGATGAGATGATTCATTCCTTTGTAGGGGACTCGGCAAAGGATTATATGATGGTTCTTTCGTATAGTCGAAAGGCTTAG 1599 0.434 MCLSLLSETAAEEQRETTTTMTVTDGQTSKVRRTEIAPCLTCPLCNDFYREATTISECMHTFCKECIWEKFRAQCETHCPVCDIDLGTYPLERTRPDPSLQDLRDKIFPHEEKSAKAPDSVPSDTKKKERSVSSLGTSPKPKLSSHSSLVERRAKKAAKKFLDEQESALAAFQLEKRSAGKKHGRPNGVAILEGCAKNSSRTKSVARKKPIPQEYIASTSQPQSQKVAGDNKKSQEHSPIPKEYVPSASQPQPQQVAGDNKADKEHSELETENVTSEIENQKTSLESDLNQQEVPNETSEKNAVLWKGKAPMWEPLNCLMEAAEKAKSSESNNMQENANFAVPVESCNNDSNTTKIMAASDRNKATKIMAASDQNEATPVQPDPIKTKGLGIKHKRRVKLAQDLNVPAEPVPTGSSSQSNERIIPIWFSLVASEEGDVCARLPQIPSRHLRVRDVNLPIAFIKKYIVKKLDLASEAEVEISLSGKPLLPSLQLKDVVEMWLKTVPKSDEMIHSFVGDSAKDYMMVLSYSRKA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01424 532 SUPERFAMILY RING/U-box 36 92 - -
Accr8g01424 532 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Accr8g01424 532 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 27 531 IPR044807 GO:0004842
Accr8g01424 532 SMART ring_2 42 82 IPR001841 -
Accr8g01424 532 MobiDBLite consensus disorder prediction 178 301 - -
Accr8g01424 532 MobiDBLite consensus disorder prediction 276 299 - -
Accr8g01424 532 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Accr8g01424 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 134 IPR013083 -
Accr8g01424 532 Pfam Zinc finger, C3HC4 type (RING finger) 42 82 - -
Accr8g01424 532 MobiDBLite consensus disorder prediction 214 229 - -
Accr8g01424 532 MobiDBLite consensus disorder prediction 109 151 - -
Accr8g01424 532 MobiDBLite consensus disorder prediction 109 133 - -
Accr8g01424 532 MobiDBLite consensus disorder prediction 259 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01424 Accr-Chr8 34939915 34943855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01424 29 453 C3H Transcription Factor Family AT2G30580 28.471 3.16e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01424 K16277 - mof:131150719 290.812