Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01414 ATGACGGAGCAGACCGAGTTCAGTGTTCTATGCAGTTTCTTCACATGGACGCAGAGAAGCAAGTCATCCGCCCAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATACCTTCTGCAAAGACAGAAATTACCTTAGTGCAATTCGGTTGATTCTTCCCAATCTCGACCGGGAGCGAGGCTCCTATGGGCTCAAGGAGTCAGTTCTCGCTACCTCCCTCATTGACGCTCTTGGGATGTCCAGGGAATCCGAGGACGCTCTACGCCTCATCAATTGGCGCAAAGGTGGTGCGAAGACGGGCGCCAATGCTGGAAATTTTGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGGCTGGCATCTGGTAGATTGACAATAAGGGAGTTAAACGAGTTTCTTGATAAACTAGCTTCAAGTGAGAACAGGACTGAGAAGACTTCAGTTCTTTCTACCCTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTGCATCCAGATGCTGAAGATTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAACCAACGTCATAAGAGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAACTAGCAAAGAGAGTTGGTAGTGCGAGTGAAGCGTGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTTGAGTGCAAGTTTGATGGTGATCGAATCCAAATTCATAAGAATGGAACAAATATACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATCATATTACAAAATATTCTTGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATCGCAAAGGCAGCAAGGGACGGCCTTGATAGTGATAGACTGTTATGTTATGTTGCGTTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTTTGAAGGAAAGACACGAGCTTCTTTGTAAAGTTGTTAGGCCCTTAAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGAACCTTGTTGGTCATTTATTGCGCATAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAAGTATTGAGAATAGAGATGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGTAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCACTTATCATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTAGGCCTTGCAGAGCGTCCCTCCCCCATTGCACATCCCAGGCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTCACTAACCATTCGAAAGAGCGGCCTGATGTGTGGATTGAGAGCCCTGACAAATCAATAATTCTCTCTATAACCAGTGACATTCGAACTATAGACTCTGAGGTATTTGCTGCACCTTACAGTTTGAGATTTCCTCGGATTGACCGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCGTTTATAGAACTCGTGCATTCTAGCAATGGCACCACAAAGGCAAGCACAGAGTATGGAGGCATGCAGGATGGCAAATCAAAACGCTTGAAATCCTCTAAAAGGGAAGGGAAAAAAAACATGTCCGTTGTCCCTTCTCATTTAATTCAGACTGATGTTTCCGATGTCAAGGGGGGTTCCTTAATATTTTCGAATATGATGTTTTATTTCGTCAATGTGCCTCCATCCCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCGATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCTGCAAAACGTCACGGTGATATCATTCATTTTAGTTGGGTAATAGATTGCTGTGCGCAAAAGAAGCTTATTCACTTACAGCCAAAGTACTTCCTTTTCATTTCTGAGCCCACAAAGAAGAAGTTATCTGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGATTGTGCGGACATCAAGCAGCTCTTGAGCAATATTCCCAGATCAAAAAAAGATGTCAGCACAATCGACTATTACAGGAGAAAGTACTGCCCAAAGGATAAGTGGTCTCACTTTCAAGGATGCTGCATTTATTTCCACACTATTTTACCACCTTCGAAAGGAGATTGGGAGGTTCTGTCGGGACTTTCATTGAGGAGATTGCGGTCTGAAATTCTCATGAGTGGCGGTAAAGTTACCAGTAGTCCCACTTCTGCTACCCACTTTGTGGCCTTATCAGTTCCAGGATATAATATGGACTTTAAAGAAATGTTAACGAGTTTCTCTTCAGTCGAAGGAAAATTTCTTTTGAGCAAGCGTTTGCATGTTGTTGGATCTCAGTGGCTTGAAGATTGTTTGGAACAAGGCCGACGATTACCAGAACAAACATATACATTGAAGCCCAGCGGAGTAGAAGAACCAGCTACTGAAGAGAGCATACATGATTTGGCTTTAGAGGGTCATTGTGGTGGACATAATTTAGAAGACCAAAAATCGTCACTTGTCTCTGAAAAGGGAAGTCAGCTGAGAAGTGCAAAACCTGTTGTTGAAAGTTTGGTGTCCCTGGAAAGGAGTGGCAAAAGGAAACGAGGAAGACCTGTAGGCAGAGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCGTCTATCACGAGCACGTATTGGAAAAAGGCCTGCAAAAATATGTGAATATGAAACAGATGAAAGCGGTTCTCATGATGAAAAACCATGTGAAGGTGAGATTGACTCAAGAGGATTCAGTCTTGACTCTCATAATGGCTTAGAATTCACCGAGACTGTGACTTTACAAAATCCGGAGCCATCAAAACGAGATGGTGCAGTTAAGCAAGAGATTTTTAAGGACGTCGAACACGAAGAACATTCTGTTCCCGAAGTTGAAATGACCAAGCAGCATGATGACCAAAACAATAGGACTGAACAACTGGAAGTTATGGCTGATCCGATACAGGCAATGCTTTTTAACATGTTTCCCAGCCTTGCGACAAAGAAAGTTGCCGAAACAAAGAATGATGTTAATGATAAGCCACCTGAAGAATTCAAAGGTAATGTTAAAGATGACAAGCTACCTGAGCAATTGAATGATAATGTTAAAGATGATAAGCCACCTGAACAATCCAAATCCAATGCTGAGCCTGCAAGGAAAAAGAAAGTTAGCTATAAGGATCTTGCTAATAAGCTGCTCGAGGATTGCTAG 3549 0.421 MTEQTEFSVLCSFFTWTQRSKSSAQKRSKFRKFLDTFCKDRNYLSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTIRELNEFLDKLASSENRTEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHELHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVGSASEAWKKLHGKEVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILQNILVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRLLCYVAFDILYVGDTSVIHQTLKERHELLCKVVRPLKGSLEILIPNGGLNSNCPSGEPCWSFIAHNVDEVERFFKESIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPIAHPRRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIESPDKSIILSITSDIRTIDSEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKASTEYGGMQDGKSKRLKSSKREGKKNMSVVPSHLIQTDVSDVKGGSLIFSNMMFYFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHFSWVIDCCAQKKLIHLQPKYFLFISEPTKKKLSEEIDEFSDSYYLNLDCADIKQLLSNIPRSKKDVSTIDYYRRKYCPKDKWSHFQGCCIYFHTILPPSKGDWEVLSGLSLRRLRSEILMSGGKVTSSPTSATHFVALSVPGYNMDFKEMLTSFSSVEGKFLLSKRLHVVGSQWLEDCLEQGRRLPEQTYTLKPSGVEEPATEESIHDLALEGHCGGHNLEDQKSSLVSEKGSQLRSAKPVVESLVSLERSGKRKRGRPVGRGSKMVKTAGNQTRLSRARIGKRPAKICEYETDESGSHDEKPCEGEIDSRGFSLDSHNGLEFTETVTLQNPEPSKRDGAVKQEIFKDVEHEEHSVPEVEMTKQHDDQNNRTEQLEVMADPIQAMLFNMFPSLATKKVAETKNDVNDKPPEEFKGNVKDDKLPEQLNDNVKDDKPPEQSKSNAEPARKKKVSYKDLANKLLEDC 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01414 1182 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Accr8g01414 1182 MobiDBLite consensus disorder prediction 1068 1087 - -
Accr8g01414 1182 NCBIfam ATP-dependent DNA ligase 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Accr8g01414 1182 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Accr8g01414 1182 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr8g01414 1182 SUPERFAMILY BRCT domain 791 912 IPR036420 -
Accr8g01414 1182 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Accr8g01414 1182 MobiDBLite consensus disorder prediction 1118 1182 - -
Accr8g01414 1182 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Accr8g01414 1182 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Accr8g01414 1182 SUPERFAMILY BRCT domain 655 742 IPR036420 -
Accr8g01414 1182 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 206 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr8g01414 1182 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Accr8g01414 1182 CDD OBF_DNA_ligase_IV 448 592 - -
Accr8g01414 1182 MobiDBLite consensus disorder prediction 967 995 - -
Accr8g01414 1182 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Accr8g01414 1182 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Accr8g01414 1182 ProSiteProfiles ATP-dependent DNA ligase family profile. 336 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr8g01414 1182 SMART BRCT_7 653 729 IPR001357 -
Accr8g01414 1182 SMART BRCT_7 814 900 IPR001357 -
Accr8g01414 1182 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Accr8g01414 1182 Gene3D BRCT domain 666 779 IPR036420 -
Accr8g01414 1182 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr8g01414 1182 ProSiteProfiles BRCT domain profile. 803 910 IPR001357 -
Accr8g01414 1182 FunFam DNA ligase 444 605 - -
Accr8g01414 1182 MobiDBLite consensus disorder prediction 617 632 - -
Accr8g01414 1182 Gene3D BRCT domain 799 910 IPR036420 -
Accr8g01414 1182 FunFam DNA ligase 1 218 - -
Accr8g01414 1182 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Accr8g01414 1182 Gene3D - 445 605 IPR012340 -
Accr8g01414 1182 FunFam DNA ligase 666 780 - -
Accr8g01414 1182 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr8g01414 1182 PANTHER DNA LIGASE 4 3 1175 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Accr8g01414 1182 FunFam DNA ligase 220 443 - -
Accr8g01414 1182 MobiDBLite consensus disorder prediction 607 632 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01414 214 601 Core DNA Replication Machinery Family AT1G08130 27.047 2.09e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01414 K10777 - gmx:100816002 1698.72