Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01403 ATGCATGGTCAAATTAAAGTTGAACTGAGTAACCCGATTAGCGGGTCCGACCCATGTGCACGTGGTCCATTTGCATGTGCGGGGATGGAACAGATATGCGATATACCAGGTCGAAGCCGAAGAGGAAGAAAACACGATAAATCGTCAGTCTGTTCTTGTTGTTCTCTTGTTTTAGGAACAATGAAGAATTCGCCTCATCACCAGAGTGACATTGAGGCCGGAAGTACCAGCCACGGCGACCATGACGACGCGGAAAGTTCGTCTGATCCATTTGTTATTCCCAGAACAAAGGATGCTCCTATTGAACGCCTCAAACGTTGGAGGCAAGCTGCGCTTGTGCTTAATGCTTCTCGTCGGTTCCGGTACACGTTGGACTTGAAAAAAGAAGTGGAGAAGCGGCAAATATTGGGGAAGGTTAGGGCTCATGCAGAAGCAATTAGAGCTGCATATCTGTTCAAAGGTGCTATAAACGGCGGGAATGGAACCCCTCCTCATCCAACCCCAGTTGGTGACTTTGGGATTGGAAATGAACAACTTTCTTCAATTTCTAGGGATCATAAAGTTGATTTTCTTGAGCAATATGGAGGAGCTAGAGGGCTATCAGAATTGTTGAAATCTAGTACAGAGAAGGGGATTAATGGTGATGATACAGATATATTAAAACGAAGGAATGCTTTTGGTTCAAACAATTATCCTCGAAAGAAAGGAAGGAGTTTCTTGATGTTTTTGTGGGATGCTTGCAAGGATCTGACCTTGATTATATTACTGGTAGCTGCTGCAGCTTCATTAGCACTAGGAATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTAATTCTTGTTGTTGCTGTTACAGCTATAAGTGATTATAAACAATCGCTTCAGTTTCAACATCTAAATGAGGAGAAGAGAAATATACGTTTAGAGGTTATAAGAGGTGGTAGAAGAGTTGAGATCTCTATATATGACATCGTTGTTGGTGATGTTGTACCCCTTAACATTGGTGATCAGGTCCCTGCCGATGGTATCTTGATCACTGGTCACTCTCTTGCTATTGATGAATCAAGTATGACTGGAGAGAGCAAGATAATCTATAAGGACTCTAAAAACCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACCATGCTGGTACTCGCTGTTGGTTTAAATACTGAATGGGGGCTTCTGATGTCTAGTATTTCAGAAGAAAATGGTGAAGAAACGCCCTTACAGGTACGCTTAAATGGCGTTGCCACGTTCATTGGTATTGTTGGACTCTTTGTTGCTGTTATCGTTTTGATTGTGTTGTTGGCCAGATATTTCTCTGGGCATACTAGAGATGCAAATGGAAATGTTGAATTTAAGGCAGGCAAGACAAAAGTTGGTGATGCAATTAATGGGGCAATTAAAATAGTTACAGTTGCGGTGACCATTGTTGTAGTTGCTGTGCCTGAAGGGCTTCCTCTAGCAGTTACCTTAACACTTGCCTACTCGATGAGAAAAATGATGGCGGACAAAGCTTTGGTGAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGTGATAAGACTGGTACATTGACCATGAATCAGATGAGCGTGGTTGAGGCTTACAGTGGAGCAAAGAAGATTGCTCCAGCTCACAAGCCAGAGCTCTCTCGGAATCTCTGCGACTTGATCATTGAAGGTGTTGCACAGAACACCAATGGTAGTGTCTATACGGTTGGGGGTGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGCATTAAGCTGGGGATGAATTTTGAGGCTGCCAGATCAGAGTCATCAATTATTCATGTTTTTCCATTTAATTCAGAGAAAAAACGTGGAGGCGTTGCAGTAAGGACGTTTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGTTGTGCATGGTATATTGATGAAAATGGCCAGTTAATGAAGATGGATGATGAGAAGATGAAATTTTTTCAAAAAGCTATTGACGATATGGCTGCTGCTAGTTTACGATGTGTTGCCATGGCATATAGATCATGTGAAATAACAAGTGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCGGAGGATGATCTGATTTTACTGGCTATTTTTGGTCTAAAGGATCCCTGTCGACCTGGTGTCAAAGAAGCTGTACAACTTTGCCAAAAAGCAGGAGTTAAGGTACGAATGGTAACCGGTGACAATATAAAAACTGCTATATCAATTGCTGTAGAGTGTGGAATACTTCGATCATTGGCAGAAGCTGTGGAGTCAAACATCATTGAAGGAAAAACATTTCGTGCATTGCCAGATGACCAGAGAGAAAAAATTGCCGGAAGTTTATTGGTCATGGGACGGTCTTCTCCAAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGGATGTTGTGGCTGTTACTGGAGACGGAACTAATGATGCTCCTGCCCTACATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGGACAGAAGTTGCTAAAGAGAGTTCAGACATCATTATTTTGGACGACAATTTTGCTTCGGTTGTGAAGGTTGTCAGATGGGGGCGGTCAGTATATGCAAATATTCAGAAATTTATCCAGTTCCAACTTACTGTCAATGTTGCAGCTCTTGTTATTAATGTTATTTCTGCAGTTTCATCAGGCAATGTCCCACTAAATGCAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACACTTGGAGCGCTAGCCTTGGCAACTGAACCGCCTACGAATCATTTGATGGATCTGCCTCCAGTTGGTAGAAGTGAACCTCTTATAACAAACTACATGTGGAGGAATTTGCTTTTACAGGCAGCGTATCAAGTGTCTGTTTTGCTTGTACTGACTTTCCGAGGTACGACTATATTGAATCTGAAGCATTACCCTGACCATACAAAAGTGAAGAACACTTTAATATTCAATGCCTTTGTCCTCTGTCAAGTATTTAATGAATTTAATGCTCGAAAGCCAGATGAAAAGAACATATTCAGGGGAATCACAAAAAACTACCTCTTTATAGGGATAGTGGGTTTGACTGTCATACTTCAGATTATCATCATTGAATTCCTGGGGAAGTTCACTTCAACAGTGAGGCTTAATTGGCAGCAGTGGCTCACCTGCGTTATCATTGGAATTATCAGCTGGCCTCTTGCTCTCTTCGGGAAATTCATACCGGTGCCAAAGAGTCGCTGTCACGAGCCCTTTTATAAGCTTTGGTCCAAGCTACCAATACATGGCTGA 3375 0.4252 MHGQIKVELSNPISGSDPCARGPFACAGMEQICDIPGRSRRGRKHDKSSVCSCCSLVLGTMKNSPHHQSDIEAGSTSHGDHDDAESSSDPFVIPRTKDAPIERLKRWRQAALVLNASRRFRYTLDLKKEVEKRQILGKVRAHAEAIRAAYLFKGAINGGNGTPPHPTPVGDFGIGNEQLSSISRDHKVDFLEQYGGARGLSELLKSSTEKGINGDDTDILKRRNAFGSNNYPRKKGRSFLMFLWDACKDLTLIILLVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVVAVTAISDYKQSLQFQHLNEEKRNIRLEVIRGGRRVEISIYDIVVGDVVPLNIGDQVPADGILITGHSLAIDESSMTGESKIIYKDSKNPFLMSGCKVADGSGTMLVLAVGLNTEWGLLMSSISEENGEETPLQVRLNGVATFIGIVGLFVAVIVLIVLLARYFSGHTRDANGNVEFKAGKTKVGDAINGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMSVVEAYSGAKKIAPAHKPELSRNLCDLIIEGVAQNTNGSVYTVGGDVEVSGSPTEKAILHWGIKLGMNFEAARSESSIIHVFPFNSEKKRGGVAVRTFDSQVHIHWKGAAEIVLACCAWYIDENGQLMKMDDEKMKFFQKAIDDMAAASLRCVAMAYRSCEITSVPTSEEELAHWSLPEDDLILLAIFGLKDPCRPGVKEAVQLCQKAGVKVRMVTGDNIKTAISIAVECGILRSLAEAVESNIIEGKTFRALPDDQREKIAGSLLVMGRSSPNDKLLLVQALRRKGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVISAVSSGNVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDLPPVGRSEPLITNYMWRNLLLQAAYQVSVLLVLTFRGTTILNLKHYPDHTKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFRGITKNYLFIGIVGLTVILQIIIIEFLGKFTSTVRLNWQQWLTCVIIGIISWPLALFGKFIPVPKSRCHEPFYKLWSKLPIHG 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01403 1124 NCBIfam calcium-translocating P-type ATPase, PMCA-type 186 1104 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Accr8g01403 1124 MobiDBLite consensus disorder prediction 63 95 - -
Accr8g01403 1124 FunFam Calcium-transporting ATPase 859 1106 - -
Accr8g01403 1124 Gene3D - 547 742 IPR023299 GO:0000166
Accr8g01403 1124 FunFam Calcium-transporting ATPase 547 742 - -
Accr8g01403 1124 Pfam Cation transporting ATPase, C-terminus 927 1101 IPR006068 -
Accr8g01403 1124 FunFam Calcium-transporting ATPase 245 302 - -
Accr8g01403 1124 Gene3D - 534 887 IPR023214 -
Accr8g01403 1124 SUPERFAMILY Calcium ATPase, transmembrane domain M 194 1104 IPR023298 -
Accr8g01403 1124 Pfam haloacid dehalogenase-like hydrolase 534 856 - -
Accr8g01403 1124 SUPERFAMILY HAD-like 535 947 IPR036412 -
Accr8g01403 1124 Gene3D - 217 413 - -
Accr8g01403 1124 SMART Cation_ATPase_N_a_2 194 267 IPR004014 -
Accr8g01403 1124 FunFam Plasma membrane calcium-transporting ATPase 2 740 887 - -
Accr8g01403 1124 FunFam Calcium-transporting ATPase 99 155 - -
Accr8g01403 1124 SFLD p-type atpase 519 894 IPR044492 -
Accr8g01403 1124 Pfam E1-E2 ATPase 315 515 - -
Accr8g01403 1124 NCBIfam HAD-IC family P-type ATPase 477 560 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr8g01403 1124 NCBIfam HAD-IC family P-type ATPase 808 923 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr8g01403 1124 Pfam Ca2+-ATPase N terminal autoinhibitory domain 89 130 IPR024750 GO:0005516
Accr8g01403 1124 Gene3D - 245 1092 - -
Accr8g01403 1124 FunFam Calcium-transporting ATPase 291 413 - -
Accr8g01403 1124 Gene3D - 100 154 - -
Accr8g01403 1124 SFLD Haloacid Dehalogenase 519 894 - -
Accr8g01403 1124 SUPERFAMILY Calcium ATPase, transduction domain A 315 410 IPR008250 -
Accr8g01403 1124 FunFam Calcium-transporting ATPase 9 plasma membrane-type 391 561 - -
Accr8g01403 1124 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 544 739 IPR023299 GO:0000166
Accr8g01403 1124 MobiDBLite consensus disorder prediction 73 88 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 537 551 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 866 878 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 757 767 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 361 375 - -
Accr8g01403 1124 PRINTS P-type cation-transporting ATPase superfamily signature 735 746 - -
Accr8g01403 1124 CDD P-type_ATPase_Ca_PMCA-like 219 975 - -
Accr8g01403 1124 ProSitePatterns E1-E2 ATPases phosphorylation site. 539 545 IPR018303 -
Accr8g01403 1124 Pfam Cation transporter/ATPase, N-terminus 195 262 IPR004014 -
Accr8g01403 1124 PRINTS Sodium/potassium-transporting ATPase signature 530 551 - -
Accr8g01403 1124 PRINTS Sodium/potassium-transporting ATPase signature 280 300 - -
Accr8g01403 1124 PRINTS Sodium/potassium-transporting ATPase signature 653 671 - -
Accr8g01403 1124 PANTHER CATION TRANSPORTING ATPASE 147 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01403 Accr-Chr8 34564512 34583962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01403 61 1119 Primary Pumps ATPases AT5G57110 71.402 0.0 1531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01403 K01537 - gmx:100820121 1603.19