Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01312 ATGGCTTTCTGCGGCAGTGACAAACTGATGAAAAGGCTGGGTGATGACGATGATCTTGTGTCCAGAGTGGTTCCGGCTGTGACGGTGGTGCTGGAAGGCCGTTCGATCTGCCACCGTATCAGCCTCCACAAGCACGAGAGCTACCGAAGTCTGGCCAAGGCTCTGCGAAAGATGTTTGTGCAGGATAATGCAGAAGAAGATGAAGATGATGATAGTGTTGATCTCTATAATGCAATTCCTGGCCACCTTGTTGCTTATGAGGACGTGGAGAATGATCTTCTTCTTGCCGGTGACCTCAACTGGAAGGATTTTGTGCGTGTGGCGAAGAGAATAAGGATACTGCCAGAGAAGAAGGGAAACTCAAGGAAGAATACAAAAGCAGTATGA 387 0.4858 MAFCGSDKLMKRLGDDDDLVSRVVPAVTVVLEGRSICHRISLHKHESYRSLAKALRKMFVQDNAEEDEDDDSVDLYNAIPGHLVAYEDVENDLLLAGDLNWKDFVRVAKRIRILPEKKGNSRKNTKAV 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01312 128 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 117 IPR003311 GO:0005634|GO:0006355
Accr8g01312 128 Pfam AUX/IAA family 24 114 IPR033389 -
Accr8g01312 128 Gene3D - 21 126 - -
Accr8g01312 128 ProSiteProfiles PB1 domain profile. 24 118 IPR000270 GO:0005515
Accr8g01312 128 SUPERFAMILY CAD & PB1 domains 36 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01312 Accr-Chr8 32776943 32778114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01312 21 128 B3 DNA Binding Superfamily AT1G59750 31.532 1.99e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr8g01312 AUX_IAA 2.5e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01312 - - tcc:18589307 169.859