Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01298 ATGAGCTTCCGTTCTTCTTCATCTTCTAACACTTCTTTTCATCATCATCCTTCAAATGATATCAATAATCTTAACCTATATCTTCTTCTTGAGCTTTCTTCATCTTCTTCTAATTCATCTTCTCCTCCATCAGCAAATTACAGTAGTAGTAATATCATGGAGCCTCGGGTTTTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTTGGAGGTCACCAGAATGCACACAAGCTGGAGAGGATACTGGCCAAGAAGAGCAGAGAACTCAGTTCAATGCACAATAATTTTGGGCTCCCTACTACTGATCACAACAGGTCTGGCTCGAGCCGTCTTGTTGCACGTGTGGGCTCATCACTAAGCCATGGTGAAGTTGGTGGTGGGGCTAGCTATGAAAGAAGAGAGTTTAACTATGGTGGTGGTTCCAATAACTTCAGGTCTTCTGAAAGTAATGTTCATGATCAGCAGGAAGATATTGGTCAACTTGACTTGTCTTTAAGGCTTTAA 516 0.4205 MSFRSSSSSNTSFHHHPSNDINNLNLYLLLELSSSSSNSSSPPSANYSSSNIMEPRVFSCNYCQRKFYSSQALGGHQNAHKLERILAKKSRELSSMHNNFGLPTTDHNRSGSSRLVARVGSSLSHGEVGGGASYERREFNYGGGSNNFRSSESNVHDQQEDIGQLDLSLRL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01298 171 FunFam Zinc finger protein 2 34 105 - -
Accr8g01298 171 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Accr8g01298 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Accr8g01298 171 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 116 IPR044246 GO:0009788
Accr8g01298 171 Gene3D Classic Zinc Finger 34 109 - -
Accr8g01298 171 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01298 Accr-Chr8 32618875 32619390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01298 17 171 C2H2 Transcription Factor Family AT5G57520 50.617 3.91e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr8g01298 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01298 - - gmx:100778014 119.398