LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g01273	ATGATGCTTTCTTCTTTGCCTAGTAAAATACTAATTGGTCTGTCCTTAGACCCAGACGATAGCAGAGAACTTCTCTCATGGGCAATTAGAGTGCTAGCCAATCCTAACGACACCATCGTTGCCTTGCATGTTCTTGTTTCTAAGGATAAGAAGAAGAAGAGGAAGAAGCGTGGTTCAACAACAAGAAGGCAGTCACAACTTCGACGGGCTAAATCCTATGTCATATCTCTGCTTGGTGAATTTGCAAAGATGTGTTGGTCTAAGCAGGTGAATCTGGAAGCCAAAGTGGCATTTAGTTCCAATGTAGGTGGAGGTTTGATTGAAGAAGCCAAGTCAATATCTGCTGACTATCTTCTTCTTCGTGGTTCTAGAAACCAGTCCAACAAGAATCAGGCCTCTAATGAAATCACCAAGTACTGCTATGAGAATGTTCAGGAAAGCTGCACTGTAGTCTCAGTTGGGAAAAGCTCAAAATCCAGTTTTACAGATTCTCAAGATAATTGTGAATCAAGGTCAGGGTGCCTTATGAAGGATAAGGAAAGTGACAGGGGAGCCTCCCCTGTTTTGAAGGCCTTAATTTCAGGCTCGAGCTCAAAGACTCGAACACGTTCTCCAAGAACAGTGTTGGAGGCACTTGAGGGACAATCTAACAGCACAGAAGATGACACATTTAGCACAAGGGTCTCAAGCATCACAGACACTCCTTCAACTGGTTCTAAAATGAAAAACCAGTCCAATAATTTAAGGAAACCAGAGTCGCCATTTAGACGCATAGCCTCCTTCCTTGCATCTCCACTTAGAAGGAAAAGCTCCAAAAAGTCCCAAAATGAAAACAGACAACCTTTGTTAAAATGCTTCAGTTATGAGGAGATCTCCAACGCCACAAAAGGCTTTCACCAAGATAATTTGGTGGGACGAGGTGGGTACTCTGAAGTATACAGAGGAGATCTTTGTGATGGACAAACTATTGCAGTGAAAAGGTTGTCCAAGGACAACAAGGATGCCAACAAGGAAAAAGAGTTCCTTATGGAATTAGGAGTCATTGGACATGTCTGTCATCCTAATACTGCATCTTTAGTTGGTTGCTGCATTGAAAATGGACTCTACCTGATTTTTAAGTACTCCCAAAATGGAAACTTGGCCACTGCATTGCATGGTAAATCGGGAACTTCACTTGACTGGCCAGTTAGATACAAAATCGCCATTGGAGTAGCAAGAGGGCTGCATTATCTTCACAAGTGTTGCAAACGCAGAATAATTCATCGTGACATTAAAGCCTCCAATGTGCTTCTGGATCCAGATTATGAGCCACAGATTACTGATTTTGGGCTAGCAAAGTGGCTTCCAAACAAGTGGACCCACCATGCTGTAATTCCAGTGGAAGGCACGTTTGGGTACTTGGCACCAGAGTCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTATGCATTTGGGATTCTTCTTCTGGAGATTATAACTGGAAGAAGACCTGTTGATTCTAAGAAACAGAACCTTCTCCTTTGGGCAAAGCCTCTGATGGAATCAGGGAACTTTAAGGAGCTGCCTGATCCGAGAATGGAAGGTATATATGATGAAGAGGAATTGAACAGAATAGTGGTCACAGCTTCATACTGTGTGAGACAATCTCCACTTTGGCGTCCCTCAATGAGCGAGGTGTTGGAACTCCTAACTAACGGAGAAGACAACGGAGAAGACAGTGAGGTTGGGAATAGCTGGAGGATCCCACAGTTCACATCTGATGAATTGGATGATTATTCTATGGCCTTTGGATATGAAGTGCCTTCTGATATATCTCTTGAGGACTTTTTGTGA	1839	0.4296	MMLSSLPSKILIGLSLDPDDSRELLSWAIRVLANPNDTIVALHVLVSKDKKKKRKKRGSTTRRQSQLRRAKSYVISLLGEFAKMCWSKQVNLEAKVAFSSNVGGGLIEEAKSISADYLLLRGSRNQSNKNQASNEITKYCYENVQESCTVVSVGKSSKSSFTDSQDNCESRSGCLMKDKESDRGASPVLKALISGSSSKTRTRSPRTVLEALEGQSNSTEDDTFSTRVSSITDTPSTGSKMKNQSNNLRKPESPFRRIASFLASPLRRKSSKKSQNENRQPLLKCFSYEEISNATKGFHQDNLVGRGGYSEVYRGDLCDGQTIAVKRLSKDNKDANKEKEFLMELGVIGHVCHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKSGTSLDWPVRYKIAIGVARGLHYLHKCCKRRIIHRDIKASNVLLDPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPESFMHGIVDEKTDVYAFGILLLEIITGRRPVDSKKQNLLLWAKPLMESGNFKELPDPRMEGIYDEEELNRIVVTASYCVRQSPLWRPSMSEVLELLTNGEDNGEDSEVGNSWRIPQFTSDELDDYSMAFGYEVPSDISLEDFL	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g01273	612	FunFam	Putative receptor-like serine/threonine-protein kinase	265	374	-	-
	Accr8g01273	612	Pfam	Universal stress protein family	9	151	IPR006016	-
	Accr8g01273	612	Gene3D	HUPs	3	153	IPR014729	-
	Accr8g01273	612	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	120	-	-
	Accr8g01273	612	Pfam	Protein tyrosine and serine/threonine kinase	300	564	IPR001245	GO:0004672\|GO:0006468
	Accr8g01273	612	Gene3D	Transferase(Phosphotransferase) domain 1	376	582	-	-
	Accr8g01273	612	CDD	USP_Like	9	124	-	-
	Accr8g01273	612	Gene3D	Phosphorylase Kinase; domain 1	258	374	-	-
	Accr8g01273	612	SMART	serkin_6	298	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g01273	612	MobiDBLite	consensus disorder prediction	191	251	-	-
	Accr8g01273	612	SUPERFAMILY	Protein kinase-like (PK-like)	273	565	IPR011009	-
	Accr8g01273	612	ProSiteProfiles	Protein kinase domain profile.	298	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr8g01273	612	Coils	Coil	325	345	-	-
	Accr8g01273	612	FunFam	Probable receptor-like serine/threonine-protein kinase At5g57670	375	583	-	-
	Accr8g01273	612	MobiDBLite	consensus disorder prediction	157	254	-	-
	Accr8g01273	612	MobiDBLite	consensus disorder prediction	157	171	-	-
	Accr8g01273	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Accr8g01273	612	ProSitePatterns	Protein kinases ATP-binding region signature.	304	326	IPR017441	GO:0005524
	Accr8g01273	612	PANTHER	OS08G0249100 PROTEIN	52	591	IPR046958	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g01273	Accr-Chr8	32175013	32178021	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g01273	286	608	Trihelix Transcription Factor Family	AT1G70460	42.730	6.58e-78	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Accr8g01273		PK_Tyr_Ser-Thr	8.5e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g01273	-		-	pcin:129309776	999.964