LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g01264	ATGGCGAAACTATCACAGACGAAGAACAATGCCAGCAGCAACAACAACCTTGGCGTCAACACTAACAGTACTACTAGTGTGTCCACCAAAGTGAAACGAACAAGAAGAAGTGTCCCTAGAGACTCTGCTCCTCAACGTAGCTCTATATATCGTGGAGTCACTAGGCACCGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGATCGAGTCTCAGAACAAGAAAGGCAGACAAGGCGCTTATGACGATGAAGAAGCAGCGGCACATACTTATGATTTAGCTGCATTGAAGTACTGGGGTCAAGACACAATCCTCAACTTTCCGGTGGCAACGTACCTGAACGAACTGAAAGAAATGGAGGGTCAATCAAGAGAAGAATATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGCGGAGTTTCCAAATACAGAGGAGTTGCCAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTCGGCAATAAATATCTCTATCTTGGTACTTATGCAACTCAAGAAGAAGCTGCCACGGCTTATGATAGGGCCGCTATAGAGTACCGGGGGCTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCCAACGACGACAATACTATCAATCTTAGTGGCCAATCCAACTGTGACCCTAACGGTAATATTGTTACCACCTTAACGACATCAAACCATATAACTCAAGAGCAAAGGTTCAGCTTCTTCCACAACCACCAGCTTCAGGAATCGTTCGACGTTAATGGCAGAGAAGAAGCCACGCCGTTGTCTCAGCCCCGTCTGGCCGGGGTGGCAGCAACTGCCACATCAGCCCTTGGGCTGCTGCTTCAGTCGTCCAAGTTCAAGGAAATGGTGGAGATGACGTCCACGGCGGATGATTTGTCCGCGCCGGTGGCACCGGAATCTGAGATGCCGCGGCATTACAGGTTTCCGGACGACATTCAGACGTACTTTGAGGGTGAAGACTCCAACAGTAATGGGGAAGGTGATGATCATTTCATGTTCAGTGAGCTCAACTCCTTCGTGCCTCCTCTGTTCCACTGTGATGATTTTTGA	1119	0.4808	MAKLSQTKNNASSNNNLGVNTNSTTSVSTKVKRTRRSVPRDSAPQRSSIYRGVTRHRWTGRYEAHLWDKNCWIESQNKKGRQGAYDDEEAAAHTYDLAALKYWGQDTILNFPVATYLNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDRAAIEYRGLNAVTNFDLSRYIKWLKPNSNDDNTINLSGQSNCDPNGNIVTTLTTSNHITQEQRFSFFHNHQLQESFDVNGREEATPLSQPRLAGVAATATSALGLLLQSSKFKEMVEMTSTADDLSAPVAPESEMPRHYRFPDDIQTYFEGEDSNSNGEGDDHFMFSELNSFVPPLFHCDDF	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g01264	372	Gene3D	AP2/ERF domain	49	114	IPR036955	GO:0003700\|GO:0006355
	Accr8g01264	372	Gene3D	AP2/ERF domain	147	208	IPR036955	GO:0003700\|GO:0006355
	Accr8g01264	372	CDD	AP2	147	208	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	FunFam	AP2-like ethylene-responsive transcription factor	147	208	-	-
	Accr8g01264	372	MobiDBLite	consensus disorder prediction	1	32	-	-
	Accr8g01264	372	Pfam	AP2 domain	147	198	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	Pfam	AP2 domain	49	104	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	FunFam	AP2-like ethylene-responsive transcription factor	48	114	-	-
	Accr8g01264	372	SMART	rav1_2	148	212	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	SMART	rav1_2	49	118	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	SUPERFAMILY	DNA-binding domain	147	208	IPR016177	GO:0003677
	Accr8g01264	372	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	13	260	-	-
	Accr8g01264	372	MobiDBLite	consensus disorder prediction	1	48	-	-
	Accr8g01264	372	CDD	AP2	48	114	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	ProSiteProfiles	AP2/ERF domain profile.	148	206	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	ProSiteProfiles	AP2/ERF domain profile.	49	112	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	PRINTS	Ethylene responsive element binding protein signature	188	208	IPR001471	GO:0003700\|GO:0006355
	Accr8g01264	372	SUPERFAMILY	DNA-binding domain	48	113	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g01264	Accr-Chr8	31696853	31699512	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g01264	45	210	AP2-EREBP Transcription Factor Family	AT5G57390	70.414	1.05e-82	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Accr8g01264		AP2	7.1e-08	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g01264	K09285		-	gmx:100804555	489.189

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr8g01264	8	31696853	31699512	Accr12g01075	12	11365210	11368666	CCT
	Accr8g01264	8	31696853	31699512	Accr8g01264	8	31696853	31699512	ECH