Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01242 ATGGAAGCCAGCGCTGGACTTGTCGCTGGTTCTCACAACCGCAACGAGCTTGTCGTCATTCACGGCCACGAAGAGCATAAGCCTTTGAAGAATTTGGATGGCCAAGTCTGTGAGATATGCGGTGACGACGTTGGACTCACCGTGGACGGCGACTTGTTTGTCGCCTGCAATGAGTGTGGTTTCCCGCTTTGCCGTCCCTGCTATGAATATGAACGAAGAGAAGGCAGCCAACTCTGCCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGCCCTAGGGTGGAGGGAGACGAAGATGAGGAGGACGTGGATGATATAGAACATGAATTCAAGATCGCAGCAGACGAGAAGAACAAGCACAACCATATGGCAGAGGCCATGCTGCATGGCAAGATGAGCTATGGAAGAGGCCCTGAGGATGATGACAATGCTCAATTCCCACCTGTCATCGCCGGAAACCGCTCCCGTCCGGTGAGTGGTGAATTCTCAATATCATCTCATGGTTATGGAGACCAGATGCTTCCCTCTTCTCTCCACAAACGCGTTCATCCTTATCCAGTTTCTGAACCTGGAAGTGCAATAGGGGAGGAGAAGAACGAGGATGGCTGGAAAGATAGAATGGACGACTGGAAACTCCAGCAAGGAAACTTGGGGCCTGAACCTGATGAAGATCCTGATGCAGCCTTGATAGATGAAGCGAGGCAGCCATTGTCAAGGAAAGTACCAATAGCATCAAGCAAAGTAAATCCGTACAGAATGGTGATAGTGGCACGTCTCGTAATTCTGGCCTTCTTCCTCCGATACAGAATTATGAACCCGGTTCATGACGCCATAGGCCTCTGGCTCACCTCCATTATCTGCGAAATCTGGTTTGCTTTCTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCGATCGAACGCGAGACCTACCTCGATCGTCTCTCCGTGAGGTATGAGAGGGAAGGGGAGCCGAATATGCTGGCGCCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCGCCATTGGTGACGGCGAACACGATTCTGTCGATATTGGCGATGGATTATCCGGTGGATAAGATATCGTGTTATATATCGGACGATGGAGCTTCCATGTGTACGTTCGAAGCGCTCTCGGAGACGGCGGAGTTTGCGAGGAAGTGGGTTCCGTTTTGTAAGAAGTTCGCGATCGAGCCAAGAGCTCCTGAGATGTACTTCTGTGAGAAGATTGATTACCTGAAAGATAAGGTTCAGCCCACCTTCGTCAAGGAGCGTCGAGCTATGAAGAGAGAATACGAAGAGTTCAAGGTCAGAGTGAACGCACTTGTGGCGAAAGCCCAGAAAGTTCCAGCAGGAGGATGGATTATGCAGGATGGGACTCCATGGCCAGGCAACAACACGAAGGACCATCCCGGTATGATCCAAGTGTTTCTCGGCCACAGTGGCGGCTGCGACACCGACGGCAACCTTCTTCCTCGTCTGGTTTATGTATCCAGAGAGAAAAGGCCTGGTTTTGCTCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCAGCTGTGCTCACAAATGCTCCTTTCATGCTCAACTTGGATTGTGATCACTATATCAATAACAGCAAGGCTGTCAGAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGAAAGAAAGTCTGTTATGTCCAATTCCCTCAGAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAACAGGAACACTGTCTTCTTTGATATTAACATGAAGGGTCTAGATGGTATCCAGGGTCCTGTGTATGTGGGGACAGGATGTGTGTTCAGGAGGCAAGCTTTATACGGATACAATCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTAAGTTGTGATTGCTGCCCATGTTTTGGACGCCGCAGGAAGCAAAAGTATGCAAAGGATGGTGCAAATGCTGAGTCTGCAATGCTACAACAAGCAGGAATGGAAGATGATAAAGAGTTGCTCATGTCTCAGATGAATTTTGAAAAGAAATTTGGGCAATCATCTATTTTTGTCACTTCAACTTTGATGGAGGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCTCTGCTCAAAGAAGCAATTCATGTCATAAGCTGTGGCTATGAGGATAAAACCGAATGGGGAACCGAGCTGGGTTGGATCTATGGATCTATTACTGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCAATTTACTGCAACCCAAAGAGGCCCGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATCGGCTCAATCAGGTGCTTCGTTGGGCGCTGGGTTCGATTGAGATCTTCTTCAGTCCCCATTGCCCTGCTTGGTATGGCTACAAGGGTGGCAACAAGCTCAAGTGGCTCGAGCGATTCGCCTATGTCAACACCACTGTCTACCCTTTCACTTCTCTTCCTCTACTTGCCTACTGTATTCTTCCTGCTATTTGCTTGCTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCCTTGTTCTCTTCCATCATTGCGACGGGCTTGCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAACGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTGTTTGCTGTCATACAAGGTCTTCTCAAGGTCCTAGCTGGAATCGACACAAACTTCACTGTTACATCAAAGGCAGCAGATGATGAGGACTTTGGTGAATTATACACCTTTAAATGGACCACTCTCCTAATCCCACCAACCACTATACTAATCATCAATATTGTTGGTGTTGTTGCTGGAATCTCAGATGCAATCAACAATGGCTACCAATCTTGGGGACCTCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTCATTGTTCATCTCTACCCATTCCTTAAAGGTTTGATGGGAAGACAAAACAGAACACCCACCATAGTTGTGATATGGTCAGTGCTCATGGCTTCTATTTTCTCTCTGCTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGTCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3132 0.4828 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPLCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFKIAADEKNKHNHMAEAMLHGKMSYGRGPEDDDNAQFPPVIAGNRSRPVSGEFSISSHGYGDQMLPSSLHKRVHPYPVSEPGSAIGEEKNEDGWKDRMDDWKLQQGNLGPEPDEDPDAALIDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRIMNPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIERETYLDRLSVRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFAIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTDGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRRKQKYAKDGANAESAMLQQAGMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCNPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLMASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01242 1043 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 823 IPR029044 -
Accr8g01242 1043 MobiDBLite consensus disorder prediction 182 201 - -
Accr8g01242 1043 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Accr8g01242 1043 CDD mRING-HC-C4C4_CesA 35 85 - -
Accr8g01242 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Accr8g01242 1043 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Accr8g01242 1043 FunFam Cellulose synthase 19 110 - -
Accr8g01242 1043 Coils Coil 430 450 - -
Accr8g01242 1043 FunFam Cellulose synthase 449 623 - -
Accr8g01242 1043 SUPERFAMILY RING/U-box 21 105 - -
Accr8g01242 1043 Pfam Cellulose synthase 332 1037 IPR005150 GO:0016020|GO:0016760|GO:0030244
Accr8g01242 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1010 - -
Accr8g01242 1043 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 493 623 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01242 Accr-Chr8 31337395 31343984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01242 1 1043 Cell Wall Biosynthesis AT5G17420 85.345 0.0 1831