Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01172 ATGACCAATTTGGGAATTCTGCTTCACGAATGGCGACTTGCTGTGGATTCTGAGACCAAAAGCCCTGGAGAATCGTCGTTGATATTGAGTATGGGTCTTCATTACACGCCCATTGTATTTGGGAATTTGAATTACCCTGTTGATTCTTTGGCGAAGAATTTGAACTGGGGTCATATTCTGGCTTATGATTATCATCTTCCTTCACTGGAGAATTTCACAAATCCTCATGCTGCTCTGTATGATCCTGTGAGTCATGTGAATACTGATTTTGGTATAAGGAAATGGTTGAGCATAGGGTTTCCTTCTAACAAGCTGCTTCTGGGATTGCCTTACCATGGCTATGCTTGGGCATTAGATAATCCCAAGGAAACTGCCATTGGTGTTCCATCATCGGGTCTGGCTGTGACACGAGACGGGTCAATGAGCTACAAGTACATAAAGTGGTATGTTCGGAGTTATGGTGCTCCTACGTTGTATAATGCTACCTACGTCGTGAATTATTGCACTATTGGTTCTAGTTGGATCAATTTTGATGATGTTGAAGCCGTCAGAACTAAGGTTGCCTATGCCAAGGAAAAGAAACTGCTCGGATACACAGTGTTTCAGGTGATAAATGATGATAATTGGGTGCTTTCTAAGGCAGCACAAGATGAAGAAACTGATCATGGAAACAAACGGAGGCTATTACGTATTATTTTACTTCCCGTTTCAATTGTGATAACATTAGGAGTTATCCTTCTGTGCTGCTTAAGAAGCAAGTCACTCAAATCAAAAGTCAAGATGGTGTTTGACAAAAGTTTCAGGCCTGAACTAGAAGGTCCTATTTTAAATGCTGAGAGCCTTGAGACCAGTGCTCCTCATCTTGAAGAATTTAGCTTTGCCATCATAAGAGCGGCAACAAATGACTTTTCTGTAGAAAACAAGCTAGGAGAGGGTGGATTTGGCCCTGTGTACAAGGGAAAACTACCTGGAGGACAAGAAATTGCGGTCAAGAGACTTTCAAAAGCTTCTACTCAAGGACATGAAGAATTTACAAATGAGGTTTCACTTACTGCAACGCTTCAGCATATCAATCTGATCCAATGA 1086 0.4153 MTNLGILLHEWRLAVDSETKSPGESSLILSMGLHYTPIVFGNLNYPVDSLAKNLNWGHILAYDYHLPSLENFTNPHAALYDPVSHVNTDFGIRKWLSIGFPSNKLLLGLPYHGYAWALDNPKETAIGVPSSGLAVTRDGSMSYKYIKWYVRSYGAPTLYNATYVVNYCTIGSSWINFDDVEAVRTKVAYAKEKKLLGYTVFQVINDDNWVLSKAAQDEETDHGNKRRLLRIILLPVSIVITLGVILLCCLRSKSLKSKVKMVFDKSFRPELEGPILNAESLETSAPHLEEFSFAIIRAATNDFSVENKLGEGGFGPVYKGKLPGGQEIAVKRLSKASTQGHEEFTNEVSLTATLQHINLIQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01172 361 ProSiteProfiles Protein kinase domain profile. 303 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g01172 361 FunFam Chitotriosidase-1 111 177 - -
Accr8g01172 361 Gene3D Glycosidases 2 208 - -
Accr8g01172 361 Pfam Protein tyrosine and serine/threonine kinase 305 361 IPR001245 GO:0004672|GO:0006468
Accr8g01172 361 SUPERFAMILY Chitinase insertion domain 112 177 IPR029070 -
Accr8g01172 361 SUPERFAMILY (Trans)glycosidases 2 221 IPR017853 -
Accr8g01172 361 Gene3D - 111 177 IPR029070 -
Accr8g01172 361 Pfam Glycosyl hydrolases family 18 2 204 IPR001223 GO:0005975
Accr8g01172 361 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 222 IPR001223 GO:0005975
Accr8g01172 361 SMART 2g34 1 206 IPR011583 GO:0008061
Accr8g01172 361 PANTHER CHITINASE 2 218 - -
Accr8g01172 361 SUPERFAMILY Protein kinase-like (PK-like) 284 361 IPR011009 -
Accr8g01172 361 Gene3D Phosphorylase Kinase; domain 1 277 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01172 Accr-Chr8 29895841 29899954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01172 1 231 Glycoside Hydrolase AT4G19810 40.343 3.14e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr8g01172 Glyco_hydro_18 2.5e-32 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01172 - - jre:109019491 470.7