Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr8g01142 | ATGGCTGGTATGCTTCCTGGAGTTGAATCTGCTCGAAGGAGACGCTTCCATCAGAGCGCGGCGTCCTCTGATTCCTCCTATTTCACCAGACGAAGTTCCCTGTGTTTATATGCAAGCAATCACGAATCCCTTCTTTCCTCTTCTTCTCTCCAGCGAAGAAGCGTATTATTCCAGGCGCGTTTGGATGAGAAGCTCACAGGAGCAGCCGGAGAAGCCAAAGAAAGATTGGATGAGAGATTAAGATCAGCTCAGATGAAATCATCTGACAAAAGGCAAAACATCAAAGAGAAGAAGAAAAGCAAAGAGGGAAGACCAGAGTTACACATAGAGGAATACGGATCAAAGAAAAGTGGTGGGTCAAGGATGATGTTCAATTGGAAGAAACTGAGCTGGAAGGCTTCAGACCAAGAGGATTGTGCTGTGTGCTTGGAGTCATTCAAGGTTGGGGATACACTGATCCATCTTCCTTGTGCTCACAAGTTTCATTACAGCTGCTTGGAGCCATGGCTACAAAATAATAATTATTGCCCATGTTGCAGAACTTCCATTATTGTCGCTCACTAG | 564 | 0.4521 | MAGMLPGVESARRRRFHQSAASSDSSYFTRRSSLCLYASNHESLLSSSSLQRRSVLFQARLDEKLTGAAGEAKERLDERLRSAQMKSSDKRQNIKEKKKSKEGRPELHIEEYGSKKSGGSRMMFNWKKLSWKASDQEDCAVCLESFKVGDTLIHLPCAHKFHYSCLEPWLQNNNYCPCCRTSIIVAH | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr8g01142 | 187 | Coils | Coil | 73 | 93 | - | - | |
Accr8g01142 | 187 | SUPERFAMILY | RING/U-box | 126 | 185 | - | - | |
Accr8g01142 | 187 | Pfam | Ring finger domain | 138 | 180 | IPR001841 | - | |
Accr8g01142 | 187 | FunFam | Zinc finger family protein | 111 | 185 | - | - | |
Accr8g01142 | 187 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Accr8g01142 | 187 | CDD | RING-H2_PA-TM-RING | 138 | 180 | - | - | |
Accr8g01142 | 187 | PANTHER | SI:CH211-59O9.10 | 12 | 184 | - | - | |
Accr8g01142 | 187 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 180 | IPR001841 | - | |
Accr8g01142 | 187 | SMART | ring_2 | 139 | 179 | IPR001841 | - | |
Accr8g01142 | 187 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 185 | IPR013083 | - | |
Accr8g01142 | 187 | MobiDBLite | consensus disorder prediction | 81 | 114 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr8g01142 | Accr-Chr8 | 29460393 | 29461721 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr8g01142 | 1 | 81 | C3H Transcription Factor Family | AT2G15580 | 50.526 | 3.22e-19 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr8g01142 | - | - | tcc:18588906 | 229.95 |