Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01142 ATGGCTGGTATGCTTCCTGGAGTTGAATCTGCTCGAAGGAGACGCTTCCATCAGAGCGCGGCGTCCTCTGATTCCTCCTATTTCACCAGACGAAGTTCCCTGTGTTTATATGCAAGCAATCACGAATCCCTTCTTTCCTCTTCTTCTCTCCAGCGAAGAAGCGTATTATTCCAGGCGCGTTTGGATGAGAAGCTCACAGGAGCAGCCGGAGAAGCCAAAGAAAGATTGGATGAGAGATTAAGATCAGCTCAGATGAAATCATCTGACAAAAGGCAAAACATCAAAGAGAAGAAGAAAAGCAAAGAGGGAAGACCAGAGTTACACATAGAGGAATACGGATCAAAGAAAAGTGGTGGGTCAAGGATGATGTTCAATTGGAAGAAACTGAGCTGGAAGGCTTCAGACCAAGAGGATTGTGCTGTGTGCTTGGAGTCATTCAAGGTTGGGGATACACTGATCCATCTTCCTTGTGCTCACAAGTTTCATTACAGCTGCTTGGAGCCATGGCTACAAAATAATAATTATTGCCCATGTTGCAGAACTTCCATTATTGTCGCTCACTAG 564 0.4521 MAGMLPGVESARRRRFHQSAASSDSSYFTRRSSLCLYASNHESLLSSSSLQRRSVLFQARLDEKLTGAAGEAKERLDERLRSAQMKSSDKRQNIKEKKKSKEGRPELHIEEYGSKKSGGSRMMFNWKKLSWKASDQEDCAVCLESFKVGDTLIHLPCAHKFHYSCLEPWLQNNNYCPCCRTSIIVAH 187
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01142 187 Coils Coil 73 93 - -
Accr8g01142 187 SUPERFAMILY RING/U-box 126 185 - -
Accr8g01142 187 Pfam Ring finger domain 138 180 IPR001841 -
Accr8g01142 187 FunFam Zinc finger family protein 111 185 - -
Accr8g01142 187 MobiDBLite consensus disorder prediction 1 22 - -
Accr8g01142 187 CDD RING-H2_PA-TM-RING 138 180 - -
Accr8g01142 187 PANTHER SI:CH211-59O9.10 12 184 - -
Accr8g01142 187 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Accr8g01142 187 SMART ring_2 139 179 IPR001841 -
Accr8g01142 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 185 IPR013083 -
Accr8g01142 187 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr8g01142 Accr-Chr8 29460393 29461721 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01142 1 81 C3H Transcription Factor Family AT2G15580 50.526 3.22e-19 77.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01142 - - tcc:18588906 229.95