Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01141 ATGTCTGGTTTGCTTCTTGTAGTTGAATATGCTCGAAGGAGAGGCTTCCATCAGAGCGGGGCGTCCTCTGGATGCACGAATTTCACCCGACGATCTTCCCTCGGTTTATATTCGAGCAATCACGAATTCCTTCCTTCCTCTTCTTCTCTCCAGCAAAGAAGCGCGCGCTCAGATGACAGCCCTGCAGGAGCAGCCGGGGAAGCCAAAGAAAGATTGGATGCGAAATTAAGATCAGCTCAAATGAACTCAGCTATCGAAAGGCAAAACATCAAAGAGAAGAAGAAAAGCAGAGAAGGAAGACCAGAGTTACACCTAGAGGTATACGGATCAAAGAAAAGTAGGATGATGTTCAATTGGAGGAAACTGCACTGGAAGGCTTCAGATCAAGAGGATTGTGCTGTGTGCTTGGAGTCATTCAAGGTTGGGGATACACTGATCCGTCTTCCTTGTACTCACAAGTTCCATTGCAGCTGCTTGGAGCCATGGTTACAAAATAATAGTTATTGCCCATGTTGCAGAGCTTCCATTATTATCGCTCATTAG 543 0.4604 MSGLLLVVEYARRRGFHQSGASSGCTNFTRRSSLGLYSSNHEFLPSSSSLQQRSARSDDSPAGAAGEAKERLDAKLRSAQMNSAIERQNIKEKKKSREGRPELHLEVYGSKKSRMMFNWRKLHWKASDQEDCAVCLESFKVGDTLIRLPCTHKFHCSCLEPWLQNNSYCPCCRASIIIAH 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01141 180 SMART ring_2 132 172 IPR001841 -
Accr8g01141 180 MobiDBLite consensus disorder prediction 43 58 - -
Accr8g01141 180 Pfam Ring finger domain 131 173 IPR001841 -
Accr8g01141 180 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 42 173 - -
Accr8g01141 180 SUPERFAMILY RING/U-box 120 178 - -
Accr8g01141 180 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Accr8g01141 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 178 IPR013083 -
Accr8g01141 180 MobiDBLite consensus disorder prediction 43 70 - -
Accr8g01141 180 CDD RING-H2_PA-TM-RING 131 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01141 Accr-Chr8 29455225 29456449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01141 127 176 C3H Transcription Factor Family AT1G49850 62.000 4.12e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01141 - - tcc:18588906 183.341