Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01139 ATGGGTGGTACCACTAGTCGACACGTTTCTCGTCCTTCTTCTCGTCGAGCCGATCACACCAACCGCTTCAGTCTTTCCTCTCTTCTTCCATGCGGTGCTTCCACTTCTCGCGCTACTTATGAGATTGAAGATCATCCAACTGAACTTCTAGTAGACTCTGCTACAGACTTGAATGACCAAGTTCAGAAAGTTACAGAGGAATCATCTTCATCACATTCAACAGAAGCTATAGCTAGCAGCTCACGTGTTGAAACTGGAACCGCCTTTGCTAGCAGTATTCAATCCAGTGAGAATGCCAATCCTCAAGATTCTTACAGAAGTGTTGCAACTAGCAATCAGAGGGAGTGCTTGTTTAAAACAAAGGAGTTAGTTCCTCATCATGAGGTAAGTACTGATCGTAGTCATAATCAATCTTACAAGGATAGTAGCCACACAGCTAGTACTTCATGTGTAGAACAGCAGTCTTCAGACCCAATCTCTTTAAATGGTTCTGCTAACAAGGATGCAGTTAATGATATTGATAATTCAGTGGATAGTAGTATCCCTCCAATATCTCATGAGACGTTGCATCTAAGGAGTTCATTCCCTCAAGTGTATGAAGACCCCAGTTCTTGTGAAAATTATGCTGACGGTCACAGCAGTGGAGCTACAGCTTTCCAGAATTCTGATTCAAATCCCAGTCCTCCTGTCTCAGATCTGCCACTAACTTCTCTGTTGCAAGAAAATGAATCTCGTGAGACAATTCCTCCAAGTTTAGGGTTTCTTGTTCCCGACAGGGAAAGAGGACATGTAAATGAGAGTGTGCTTCATGTTGATGTGGTTACTATATCTTCCAATACTTTGTCTCATGACAGCACTGATGCCATTGATCATAGTGCCAGAAGAAATGGTAGGAGACCATTTTGGGATGCTTTTTCACATCATAGCTCTAGAGGGTTTCGTGTTTCTCCAACCATTGTCTTCTCAGCTGGTGACCCTGATGATGTAGCATCTCATGACCAATGGCTTCTTGATTTGAGCAGTGGTTTCTCAAATGATGAGGCTGGAGAGGATTTTGAATATCTTGGAGGTAGAATCCGCAGATCTAATGCACGAATACTGCACTCAAGATCTCAGATCTGGGAAAGACTTCGTGATGGCCTCAATGAAACTGATCGGTGGACTAATTCTTGTCCGTTAGGACTCCACCCTGATGGCAGGTGTTTCTGTGAGCCTTTCTCCACAACTGAGGAATCTAATACCCGAACAAGCATGTCAAGAATAGTCATGCTTGCAGAAGCTTTATTTGAGTTTTTAGATGAAATTCATCGCCAACCTGCACCATTTTCACTATCTGTGGCCTCTCTCCCAGCGCCAGAATCAGTTGTTGACTCTTTCCCTCTGAAGTGTCACAAAATGGTTGACATAGCTGATGGTGATAGTAATACTGAACAATGTCACATATGCCTAGTGGAGTATGAAGAAGGGGACAAAATTCGCGTTCTGCCTTGCAATCATGAGTTCCACATGGCATGCGTTGACAAGTGGCTTAAGGAAATACATGGTATATGTCCTCTCTGTCGTGGAAGTGTTTGTGAAGGAGGTCTCACCGATTCTTCTGTCCCAAACACACAAGTATAA 1620 0.434 MGGTTSRHVSRPSSRRADHTNRFSLSSLLPCGASTSRATYEIEDHPTELLVDSATDLNDQVQKVTEESSSSHSTEAIASSSRVETGTAFASSIQSSENANPQDSYRSVATSNQRECLFKTKELVPHHEVSTDRSHNQSYKDSSHTASTSCVEQQSSDPISLNGSANKDAVNDIDNSVDSSIPPISHETLHLRSSFPQVYEDPSSCENYADGHSSGATAFQNSDSNPSPPVSDLPLTSLLQENESRETIPPSLGFLVPDRERGHVNESVLHVDVVTISSNTLSHDSTDAIDHSARRNGRRPFWDAFSHHSSRGFRVSPTIVFSAGDPDDVASHDQWLLDLSSGFSNDEAGEDFEYLGGRIRRSNARILHSRSQIWERLRDGLNETDRWTNSCPLGLHPDGRCFCEPFSTTEESNTRTSMSRIVMLAEALFEFLDEIHRQPAPFSLSVASLPAPESVVDSFPLKCHKMVDIADGDSNTEQCHICLVEYEEGDKIRVLPCNHEFHMACVDKWLKEIHGICPLCRGSVCEGGLTDSSVPNTQV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01139 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Accr8g01139 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 525 IPR013083 -
Accr8g01139 539 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Accr8g01139 539 MobiDBLite consensus disorder prediction 120 139 - -
Accr8g01139 539 MobiDBLite consensus disorder prediction 61 108 - -
Accr8g01139 539 MobiDBLite consensus disorder prediction 140 181 - -
Accr8g01139 539 SMART ring_2 479 520 IPR001841 -
Accr8g01139 539 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Accr8g01139 539 Pfam Ring finger domain 478 521 IPR001841 -
Accr8g01139 539 MobiDBLite consensus disorder prediction 1 28 - -
Accr8g01139 539 MobiDBLite consensus disorder prediction 120 181 - -
Accr8g01139 539 MobiDBLite consensus disorder prediction 200 234 - -
Accr8g01139 539 SUPERFAMILY RING/U-box 473 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01139 Accr-Chr8 29433366 29437752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01139 390 525 C3H Transcription Factor Family AT5G45290 52.980 9.24e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01139 - - qsa:O6P43_023995 572.778