Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01137 ATGGCGGAACAAACTGAGAAGGGTTTCTTGAAGCAGCCAAGAGTGTTTCTAAGCTCGAAGAAATCTGGGAAGGGGAAGAGGCCTGGAAAAGGAGGAAACCGCTTTTGGAAGTCCATTGGTCTTGGATTCAAGACTCCCAGGGAAGCTATTGAAGGAACCTACATTGATAAGAAGTGTCCCTTTGCTGGCAATGTTTCTATCAGGGGTCGTATCATTGCTGGCACTTGTCACAGTGCTAAGATGACAAGAACCATAATTGTTAGAAGGAACTATCTCCATTGGGTCAAGAAGTACCAGAGGTATGAGAAGAGGCACTCAAACATTCCTGCTCACATATCTCCTTGCTTTCGTGTAAAAGAAGGAGATCATGTGATCATTGGCCAGTGCAGGCCACTCTCAAAGACAGTGAGGTTCAACGTGGTAAAAGTGATCCCGGCTGGATCTTCTAGCGGGAAGAAGGCATTTACTGGAATGTGA 477 0.4591 MAEQTEKGFLKQPRVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFAGNVSIRGRIIAGTCHSAKMTRTIIVRRNYLHWVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSSSGKKAFTGM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01137 158 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 FunFam 40S ribosomal protein S11 1 157 - -
Accr8g01137 158 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 Gene3D - 1 157 - -
Accr8g01137 158 NCBIfam 30S ribosomal protein S17 54 143 IPR028333 -
Accr8g01137 158 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Accr8g01137 158 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Accr8g01137 158 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01137 Accr-Chr8 29390867 29392409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01137 1 158 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.679 2.96e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01137 K02949 - sind:105170572 295.819