Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01096 ATGTCTACCGATTACTCGAATGGGGACTGCGAGTCCGTCCACCAACCCTTGCTTCATTCCGGAAGGTCCAGAATCAATTCCACTTCGCAGGTTGCTATTGTTGGAGCCAATGTCTGTCCTATCGAGAGCCTGGACTACGAGATTATCGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCCGAAGGAAGATTCAGATACTCCAGTACGTATCCATGAAGTGGGTTTTGTGCTTGTTGATTGGTGCGATTGTTGGCGTGGTTGGATTTTTCCATAACCTTGCAGTTGAGACTTTAGCTGGCATCAAGTTCGTGATCACATCTGACTTGATGTTGCAGAGGAGGTTTCTCTTGGCCTTTGTAGTATTTTGTTCTTCGAATTTGGTTCTCACTCTTTTTTCCACTATTTTCACGGCTTTTATAGCACCTGCTGCTGCAGGTTCTGGTATACCAGAAGTAAAAGCCTACTTAAATGGGGTAGATGCCCCTGGAGTATTTACGCTTAGAACTCTGATCGTTAAGGTTATTGGAAGCATTACAGCAGTTTCATCATCCCTACTTGTAGGAAAGGCTGGGCCTATGGTTCATATTGGTGCATGTGTAGGATCATTGTTGGGTCAGGGTGGTTCAAAGCAATATGGACTAACATGTAAATGGTTACATTTTTTTAAGAATGACCGAGATCGAAGGGATCTAATAACATGTGGAGCAGCTGCTGGAATGGCTGCAGCCTTCCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTTTTGAAGAAATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAACTTTCTTCACAACAGCTGTAGTTGCAATTGTGCTTCGTTCATTGATAGACTTTTGTTTAAGCGGTAAATGTGGGCCATTTGGTAAAGGTGGCCTGATAATGTTTGATGTTAATCCAACAAGTATTGACTATCACCTGTCGAATGTGCTTCCTGCAATGATTATTGGGGTTGTAGGAGGCATACTTGGAAGCTTATATAATGCTCTGTTGACCAAGGTTCTCCGTGTCTACAGCATGATCCATGAGAAATGCATTCAATACAAAATTTTGCTTGCTTGCGTAATCTCTATTATTACTTCTTGTTTTATTTTTGGATTGCCATGGCTTGCATCTTGTCGACCTTGTCCAGTTGATGCAGCTGAGGAATGTCCCACAATAGGCCGTTCTGGTAACTACAAGAAATTCCAATGTCCTCCTGGTCATTACAATGATCTTGCCAGCCTTTTTTTTAACACATGTGGTGATGCTATCAAAAATCTATTTAGCACAAACACAGACGAGGAGTTTGCATATTCATCCATGTTTACCTTTTTCATCTCATGCTTTTTTCTAAGCATCTTTAGCTATGGGATTGTTGCTCCAGCTGGTCTTTTTGTGCCAAATATTGTGATTGGTGCATCTTACGGGCGTGTGGTTGGTATGATGGTTGGCAAATATTTCACTCTTGACCATGGCCTTTATGCTGTATTGGGTGCTGCTTCCTTTCTGGGAGGATCCATGAGAATGACAGTTTCCCTTTGTGTAATCTTACTAGAATTAACAAATAATTTGTCATTGCTACCCTTGGTGATGGTGTCTCTTCTTATGTCTAAAATGATAGCTGATGCTTTCAATCCAAATATATATGACATTATCATGAAAGCAAAAGGGTTTCCTTATTTAAAAAATCATGTTGAGCCATACATGAGGCAGCTAACAGTAGGCGATGTAGTCACTGGCCCGCTACATGTCTTTAATGGCATTGAAAAGGTTCGCAACATTGTGTTTATTCTCAGAACTTCAAGTCACAATGGGTTCCCCGTGGTTGATGAGCCTCCATATTCTGAAGCTCCAGTTTTATATGGTATAATCCTTCGTGACCATCTTCTCACATTGTTAAAGAAGAAAGATTTCTTGTCCGCACCAATGGCAATAGGAGATGACGCCTTCAAGAGGTTTTCTGCTGATGAATTTGCCAAGAAGGGTTCTGGCAATAGTGACAAGATAGAGGATCTACTGTTCACTGAGGAAGAGTTGGACATGTTCATAGATCTCCATCCATTTAGTAATGCTTCACCTTATACTGTCCTTGAGACAATGTCTCTGGGAAAGGCCCTTACCATTTTTCGGAATGTCGGTTTAAGGCATCTTCTGGTGATACCCAGGGTCTTTAATGGGTTCCCGGTTGTCGGCATACTAACGAGGCACGATTTCATGCCAGAACACATTCTGGGTTTGCATCCTTCGCTGGAAAGAAGCAGATGGAGAGGATTAAGAATAAAGTTGCCTTTTAGGAGCTTGGTCGCATGTAAATAG 2322 0.4242 MSTDYSNGDCESVHQPLLHSGRSRINSTSQVAIVGANVCPIESLDYEIIENEFFKQDWRSRRKIQILQYVSMKWVLCLLIGAIVGVVGFFHNLAVETLAGIKFVITSDLMLQRRFLLAFVVFCSSNLVLTLFSTIFTAFIAPAAAGSGIPEVKAYLNGVDAPGVFTLRTLIVKVIGSITAVSSSLLVGKAGPMVHIGACVGSLLGQGGSKQYGLTCKWLHFFKNDRDRRDLITCGAAAGMAAAFRAPVGGVLFAFEEMASWWRSALLWRTFFTTAVVAIVLRSLIDFCLSGKCGPFGKGGLIMFDVNPTSIDYHLSNVLPAMIIGVVGGILGSLYNALLTKVLRVYSMIHEKCIQYKILLACVISIITSCFIFGLPWLASCRPCPVDAAEECPTIGRSGNYKKFQCPPGHYNDLASLFFNTCGDAIKNLFSTNTDEEFAYSSMFTFFISCFFLSIFSYGIVAPAGLFVPNIVIGASYGRVVGMMVGKYFTLDHGLYAVLGAASFLGGSMRMTVSLCVILLELTNNLSLLPLVMVSLLMSKMIADAFNPNIYDIIMKAKGFPYLKNHVEPYMRQLTVGDVVTGPLHVFNGIEKVRNIVFILRTSSHNGFPVVDEPPYSEAPVLYGIILRDHLLTLLKKKDFLSAPMAIGDDAFKRFSADEFAKKGSGNSDKIEDLLFTEEELDMFIDLHPFSNASPYTVLETMSLGKALTIFRNVGLRHLLVIPRVFNGFPVVGILTRHDFMPEHILGLHPSLERSRWRGLRIKLPFRSLVACK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01096 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 575 743 - -
Accr8g01096 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 747 - -
Accr8g01096 773 SUPERFAMILY CBS-domain pair 566 741 IPR046342 -
Accr8g01096 773 Gene3D Clc chloride channel 65 563 - -
Accr8g01096 773 Gene3D - 564 746 IPR046342 -
Accr8g01096 773 Pfam CBS domain 694 740 IPR000644 -
Accr8g01096 773 SMART cbs_1 694 745 IPR000644 -
Accr8g01096 773 SMART cbs_1 583 636 IPR000644 -
Accr8g01096 773 CDD ClC_6_like 42 565 - -
Accr8g01096 773 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr8g01096 773 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr8g01096 773 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr8g01096 773 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr8g01096 773 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr8g01096 773 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 FunFam Chloride channel ClC3 65 382 - -
Accr8g01096 773 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr8g01096 773 SUPERFAMILY Clc chloride channel 51 565 IPR014743 -
Accr8g01096 773 ProSiteProfiles CBS domain profile. 690 751 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01096 Accr-Chr8 28444391 28448591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01096 11 768 Ion Channels AT5G33280 73.351 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01096 K05016 - qsa:O6P43_002449 1148.27