Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01079 ATGAATACAAGTGTCGCAAGTATTCAGGTCCGGGACACTCGTGACTGTCGGCCTTCGTCGGTAGTGCGTCGCTCCAATAAGCCCTTTAAGGTTGAGCGCAATCAAACTCAACTGCAAACTCAACTACAATATACACCACGTAATTCCTCTAATCAATGGAAGAGGCAGTCCCATTCTGATGCCAAAAGTAATTCATCTCAAATCTGCAAATACTGGATGAACGGAAATTGTGTATATGGCGATCGCTGTTGGAACTTGCATTCTTGGTTTCATGGCGAGCATCTCTCTGTGCTCACTAGGCTCAATGAACACAAGAAGATTGTGACCGGGATTACACTTCCCGTTGGATCGGACAAACTTTTTTCCTGTAGCACTGACGGGACACTTAGGATGTGGGACTGTCATACGGGTCAATGTGTTCATGTAAAGAATTTGGGTGATGAAGCAAGGTGTTTGATTAGTATGGGCCCTTGGGTTATTGCTGGTATTCGGAATGCTATTAAGGCGTGGAACATTCAGACAGATACTGAGGTCACTCTTGATGGACCAAAGGGCCATGTACTTTCCATGTTTGATTGCAACGATACACTTTTTGCCGGAGCAATGGATGGTGTTATTTATGCATGGAGACTGAGTTCTGAAGCAAATTTCCCATTCAAACCATTAGCAATGTTGAATGGCCACAGCAAAGCTGTCGTTTGTTTAACTGGTGGACGTGGGGATAAGATGTACTCCGGTTCTATAGATCATAGCATCAAGGTTTGGGACCTCAACACACTACAATGTATGATGACATTGAAAGGGCACACTGATGTTGTGACATCCCTTATTTGTTGGGACCAATACTTGTTATCAAGTTCATTGGATGGCACCGTAAAGGTTTGGGGTGTTACTGAAAAAGAAACTTTGGAAGTAGTATACACGCACAATGAAAAAAATGGTGTGGTTAGAATGAATGGTATGATTGATGCAAAAGGGAAACACACACTGTTTTGCTCGAGCAACAACCATTCAGTTGGACTATATGAAATGCCAACGTTTGAGGCAAGAGGAAGATTATTCTCAAAACAAGAAATTGGAGTAATAGAAGAAGGTCCTCATGGACTCTTTTTTACTGGAGACGGCACTGGTTTGCTCACTGTCTGGAAGTGGTTGGCATAG 1161 0.4307 MNTSVASIQVRDTRDCRPSSVVRRSNKPFKVERNQTQLQTQLQYTPRNSSNQWKRQSHSDAKSNSSQICKYWMNGNCVYGDRCWNLHSWFHGEHLSVLTRLNEHKKIVTGITLPVGSDKLFSCSTDGTLRMWDCHTGQCVHVKNLGDEARCLISMGPWVIAGIRNAIKAWNIQTDTEVTLDGPKGHVLSMFDCNDTLFAGAMDGVIYAWRLSSEANFPFKPLAMLNGHSKAVVCLTGGRGDKMYSGSIDHSIKVWDLNTLQCMMTLKGHTDVVTSLICWDQYLLSSSLDGTVKVWGVTEKETLEVVYTHNEKNGVVRMNGMIDAKGKHTLFCSSNNHSVGLYEMPTFEARGRLFSKQEIGVIEEGPHGLFFTGDGTGLLTVWKWLA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01079 386 Gene3D - 156 386 IPR015943 GO:0005515
Accr8g01079 386 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Accr8g01079 386 MobiDBLite consensus disorder prediction 33 59 - -
Accr8g01079 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Accr8g01079 386 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Accr8g01079 386 SUPERFAMILY WD40 repeat-like 84 383 IPR036322 GO:0005515
Accr8g01079 386 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Accr8g01079 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 265 IPR001680 GO:0005515
Accr8g01079 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 305 IPR001680 GO:0005515
Accr8g01079 386 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Accr8g01079 386 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Accr8g01079 386 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Accr8g01079 386 ProSitePatterns Trp-Asp (WD) repeats signature. 243 257 IPR019775 -
Accr8g01079 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 142 IPR001680 GO:0005515
Accr8g01079 386 SMART WD40_4 94 133 IPR001680 GO:0005515
Accr8g01079 386 SMART WD40_4 173 210 IPR001680 GO:0005515
Accr8g01079 386 SMART WD40_4 218 256 IPR001680 GO:0005515
Accr8g01079 386 SMART WD40_4 259 296 IPR001680 GO:0005515
Accr8g01079 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 259 - -
Accr8g01079 386 Pfam Zinc finger domain 69 87 - -
Accr8g01079 386 PANTHER - 46 385 IPR044715 -
Accr8g01079 386 Gene3D - 74 149 IPR015943 GO:0005515
Accr8g01079 386 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Accr8g01079 386 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Accr8g01079 386 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01079 Accr-Chr8 27988238 27990511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01079 191 379 Miscellaneous Gene Families AT5G08390 30.052 1.47e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g01079 WD40 0.0019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01079 - - gmx:100787799 435.647