Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01078 ATGAATACAAGTGTCGCAAGTAATCAGGTCCGGGACACTCGTGACTATCGGCCTTCGGCAGTGCGTCGCTCCAATAAGCCCTTTAAGATTGAGCGAAATCAAACTCAACTGCAATATACACCACGTAATTCCTCTAATCAATGGAAGAGGCAGTCCCATTCTGATGCCAAAAGTAATTCATTTCAAATCTGCAAATACTGGATGAACGGAAATTGTGTATATGGCGATCGCTGTTGGAACTTGCATTCTTGGTTTCATGGCGAGCATCTCTCTGTGCTCACTAGGCTCAATGAACACAAGAAGATTGTGACCGGGATTACACTTCCCGTTGGATCGGACAAACTTTTTTCTTGTAGCACTGACGGGACACTTCGGATGTGGGACTGTCATACGGGTCAATGTGTTCATGTAAAGAATTTGGGTGATGAAGCAAGGTGTTTGATTAGTATGGGCCCTTGGGTTATTGCTGGTATTCGGAATGCTATTAAGGCGTGGAACATTCAGACAGATACTGAGGTCACTCTTGATGGACCAAAGGGCCATGTACTTTCCATGTTTGATTGCAACGATACACTTTTTGTCGGAGCAATGGATGGTGTTATTTATGCATGGAGACTGAGTTCTGAAGCAAATTTCCCATTCAAACCATTAGCAATGTTGAATGGCCACAGCCAAGCTGTCGTTTGTTTAACTGGTGGACGTGGGGATAAGATGTACTCCGGTTCTATAGATCATAGCATCAAGGTTTGGGACCTCAACACACTACAATGTACGATGACATTGAAAGGGCACACTGATGTTGTGACATCCCTTATTTGTTGGGACCAATACTTGTTATCAAGTTCATTGGATGGCACCGTAAAGGTTTGGGGTGTTACTGAGAAAGAAACTTTGGAAGTAGTATACACACACAATGAAAAAAATGGTGTGGTTAGAATCAATGGTATGATTGATGCAAAAGGGAAACACACACTGTTTTGCTCGTGCAACGACCATTCAGTTGGACTATATGAAATGCCAACGTTTGAGGCAAGAGGAAGATTATTCTCAAAACAAGAAATTGGAGTAATAGAAGAAGGTCCTCATGGACTCTTTTTTACTGGAGACGGCACTGGTTTGCTCACTGTCTGGAAATGGCTGGCATAG 1146 0.4302 MNTSVASNQVRDTRDYRPSAVRRSNKPFKIERNQTQLQYTPRNSSNQWKRQSHSDAKSNSFQICKYWMNGNCVYGDRCWNLHSWFHGEHLSVLTRLNEHKKIVTGITLPVGSDKLFSCSTDGTLRMWDCHTGQCVHVKNLGDEARCLISMGPWVIAGIRNAIKAWNIQTDTEVTLDGPKGHVLSMFDCNDTLFVGAMDGVIYAWRLSSEANFPFKPLAMLNGHSQAVVCLTGGRGDKMYSGSIDHSIKVWDLNTLQCTMTLKGHTDVVTSLICWDQYLLSSSLDGTVKVWGVTEKETLEVVYTHNEKNGVVRINGMIDAKGKHTLFCSCNDHSVGLYEMPTFEARGRLFSKQEIGVIEEGPHGLFFTGDGTGLLTVWKWLA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01078 381 SMART WD40_4 213 251 IPR001680 GO:0005515
Accr8g01078 381 SMART WD40_4 89 128 IPR001680 GO:0005515
Accr8g01078 381 SMART WD40_4 297 338 IPR001680 GO:0005515
Accr8g01078 381 SMART WD40_4 168 205 IPR001680 GO:0005515
Accr8g01078 381 SMART WD40_4 254 291 IPR001680 GO:0005515
Accr8g01078 381 MobiDBLite consensus disorder prediction 30 54 - -
Accr8g01078 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 254 - -
Accr8g01078 381 Pfam Zinc finger domain 64 82 - -
Accr8g01078 381 MobiDBLite consensus disorder prediction 1 54 - -
Accr8g01078 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Accr8g01078 381 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Accr8g01078 381 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Accr8g01078 381 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Accr8g01078 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 137 IPR001680 GO:0005515
Accr8g01078 381 Gene3D - 147 381 IPR015943 GO:0005515
Accr8g01078 381 PANTHER - 40 380 IPR044715 -
Accr8g01078 381 SUPERFAMILY CCCH zinc finger 60 83 IPR036855 GO:0046872
Accr8g01078 381 MobiDBLite consensus disorder prediction 15 29 - -
Accr8g01078 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Accr8g01078 381 ProSiteProfiles Zinc finger C3H1-type profile. 58 85 IPR000571 GO:0046872
Accr8g01078 381 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
Accr8g01078 381 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Accr8g01078 381 Pfam WD domain, G-beta repeat 94 128 IPR001680 GO:0005515
Accr8g01078 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Accr8g01078 381 ProSitePatterns Trp-Asp (WD) repeats signature. 238 252 IPR019775 -
Accr8g01078 381 Gene3D - 69 146 IPR015943 GO:0005515
Accr8g01078 381 SUPERFAMILY WD40 repeat-like 79 378 IPR036322 GO:0005515
Accr8g01078 381 SMART c3hfinal6 60 84 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01078 Accr-Chr8 27960505 27962760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01078 186 374 Miscellaneous Gene Families AT5G08390 29.534 3.74e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g01078 WD40 0.0028 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01078 - - gmx:100787799 441.039