Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01077 ATGAATACAAGTGTCGCAAGTATTCAGGTCCGGGACACTCGTGACTGTCGGCCTTCGTTGGCAGTGCGTCGCTCCAATAAGCCCTTTAAGGTTGAGCGCAATCAAACTCAACTGCAATATACACTGCGTAATTCCTCTCTTCAATGGAAGAGGCAGTCCCATTCTGATGCCAAAAGTAATTCATCTCAAATCTGCAAATACTGGATGAACGGAAATTGTGTATATGGCGATCGCTGTTGGAACTTGCATTCTTGGTTTCATGGCGAGCATCTCTCTGTGCTCACTAGGCTCAATGAACACAAGAAGATTGTGACCGGGATTACACTTCCCGTTGGATCGGACAAACTTTTTTCCTGTAGCACTGACGGGACACTTAGGATGTGGGACTGTCATACGGGTCAATGTGTTCATGTAAAGAATTTGGGTGATGAAGCAAGGTGTTTGATTAGTATGGGCCCTTGGGTTATTGCTGGTATTCGGAATGCTATTAAGGCGTGGAACATTCAGACAGATACTGAGGTCACTCTTGATGGACCAAAGGGCCATGTACTTTCCATGTTTGATTGCAACGATACACTTTTTGCCGGAGCAATGGATGGTGTTATTTATGCATGGAGACTGAGTTCTGAAGCAAATTTCCCATTCAAACCATTAGCAATGTTGAATGGCCACAGCAAAGCTGTCGTTTGTTTAACTGGTGGACGTGGGGATAAGATGTACTCCGGTTCTATAGATCATAGCATCAAGGTTTGGGACCTCAACACACTACAATGTATGATGACATTGAAAGGGCACACTGATGTTGTGACATCCCTTATTTGTTGGGACCAATACTTGTTATCAAGTTCATTGGATGGCACCGTAAAGGTTTGGGGTGTTACTGAAAAAGAAACTTTGGAAGTAGTATACACGCACAATGAAAAAAATGGTGTGGTTAGAATGAATGGTATGATTGATGCAAAAGGGAAACACACACTGTTTTGCTCGAGCAACAACCATTCAGTTGGACTATATGAAATGCCAACGTTTGAGGCAAGAGGAAGATTATTCTCAAAACAAGAAATTGGAGTAATAGAAGAAGGTCCTCATGGACTCTTTTTTACTGGAGACGGCACTGGTTTGCTCACTGTCTGGAAGTGGTTGGCATAG 1149 0.4326 MNTSVASIQVRDTRDCRPSLAVRRSNKPFKVERNQTQLQYTLRNSSLQWKRQSHSDAKSNSSQICKYWMNGNCVYGDRCWNLHSWFHGEHLSVLTRLNEHKKIVTGITLPVGSDKLFSCSTDGTLRMWDCHTGQCVHVKNLGDEARCLISMGPWVIAGIRNAIKAWNIQTDTEVTLDGPKGHVLSMFDCNDTLFAGAMDGVIYAWRLSSEANFPFKPLAMLNGHSKAVVCLTGGRGDKMYSGSIDHSIKVWDLNTLQCMMTLKGHTDVVTSLICWDQYLLSSSLDGTVKVWGVTEKETLEVVYTHNEKNGVVRMNGMIDAKGKHTLFCSSNNHSVGLYEMPTFEARGRLFSKQEIGVIEEGPHGLFFTGDGTGLLTVWKWLA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01077 382 ProSiteProfiles Zinc finger C3H1-type profile. 59 86 IPR000571 GO:0046872
Accr8g01077 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 138 IPR001680 GO:0005515
Accr8g01077 382 SMART WD40_4 169 206 IPR001680 GO:0005515
Accr8g01077 382 SMART WD40_4 214 252 IPR001680 GO:0005515
Accr8g01077 382 SMART WD40_4 255 292 IPR001680 GO:0005515
Accr8g01077 382 SMART WD40_4 90 129 IPR001680 GO:0005515
Accr8g01077 382 Pfam WD domain, G-beta repeat 95 129 IPR001680 GO:0005515
Accr8g01077 382 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Accr8g01077 382 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Accr8g01077 382 Gene3D - 148 382 IPR015943 GO:0005515
Accr8g01077 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 261 IPR001680 GO:0005515
Accr8g01077 382 Gene3D - 59 147 IPR015943 GO:0005515
Accr8g01077 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 301 IPR001680 GO:0005515
Accr8g01077 382 Pfam Zinc finger domain 65 83 - -
Accr8g01077 382 SMART c3hfinal6 59 85 IPR000571 GO:0046872
Accr8g01077 382 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Accr8g01077 382 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Accr8g01077 382 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Accr8g01077 382 PANTHER - 37 381 IPR044715 -
Accr8g01077 382 ProSitePatterns Trp-Asp (WD) repeats signature. 239 253 IPR019775 -
Accr8g01077 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 255 - -
Accr8g01077 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Accr8g01077 382 SUPERFAMILY WD40 repeat-like 79 379 IPR036322 GO:0005515
Accr8g01077 382 SUPERFAMILY CCCH zinc finger 61 84 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g01077 Accr-Chr8 27950514 27952775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01077 187 375 Miscellaneous Gene Families AT5G08390 30.052 2.00e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr8g01077 WD40 0.0019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01077 - - gmx:100787799 435.647