LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr8g01062	ATGTCTTGGTTTAATGGGGGTAACTTTTCGGCCGAGAAGTCGGTTCGCCCGACTCGGCCCTGCTACGTTCCTCCACACTACAGGAACAATGGCATGCCTGATTTCAACAATGTGAACTCATTCATGTCGGGAAATGGGTCGTTCGCTCAGACTGGTTTTTCTTCCTTCAACTCTTACAGTTCCAGACGACAAGCTAGGGGTGGTGGTGCGAGTAACGGCCGTTTTGCTGGTCCTGGTCGTGGTCGTAGTGGTGGAGGCCGGAGGTTTGGTCGACCGGAGGAGACTGATGAGCGGAACCATTACCCGAATCGGAACGGTTTTAGGATTCCTGACGCGCTTGACACTAAAGAGAGTTTTGGAGAAGATGGCGATGTCTGTGGGGGTATCAATTTTGACGCATACGAAGATATTCCAGTGGAGGTAAGTGGTTCCGACGTACCCCCGCCGGTCAATACCTTCGCTGAAATAGAGCTGAGCGAGGGTTTGTACAAGAATATCAAGCGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCATGCGATTCCCATTGCCGTTGCTGGTCGAGACTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTCTGTTTCCCGATTATATCTGGGGTTTGGAAGGATCGTTCTAGGTTTTTGCCTACTGCTCGTGAAGGCTGGATTGCTTATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCACGATGAGGCCAAGAAGTTCGCTTATCAGACCGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCCCCGATTGCTCAGCAGTTTCGCAATTTAGAAAAAGGGGTGGACATCCTAGTTGCAACTCCTGGGCGCCTAGTTGATATGATTGAGAGAGGCAGGATTTCACTCACACGAATAAAATTTCTCGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTTCTAGACAGACTATGCTCTTCAGTGCTACGTTTCCAGAGGATATACAGAAGCTGGCTGCGGACTTTCTTTCAAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGTACTGAATTGATAGTACAAAAAGTTGAACTTGTTCGGGATATGGACAAAAGAGACCATCTTCTGGATCTTCTTCGTTCTCAAATGGTAAATGGGTTCAATGGAAAGAAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTGTCGAGAGAAGGTTTTCCAGCTATCGCGATACATGGTGATAAAGTTCAAGCGGAGAGGGAAAGCGCCTTGAGATCTTTCAAAAATGGTGCTCGGCCTATTTTGGTCGCAACCGATGTTGCTTCAAGGGGTTTAGACATACCACATGTGGGTCATGTTGTCAATTTCGACTTGCCGAAAGATATAGATGGCTATGTTCACAGAATTGGCCGAACTGGTCGTGCTGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGACAAAAACATCCCTCTTGCAAAGGCCCTAGTTGAACTTATGCAAGAATCAAACCAAGAGGTTCCCTCCTGGCTCACCGAATATGCAGCAGAGAGTTCTTCATACGATATCTATAGCAGCAAAAGGGGGCAGTGGTATGGTAAAGGCAATTATGGCGGCCGTGACTTCAGAAATATGACTCAACATGAAGAAGGGTATCACAACCACTCAGTTAATGCAGGCTTTGTTGAGAACTATGGCACTACAACTGCAGCTTATGGCATCTCTAATTTATCCAATGACTCTTTCGATATAGCCAACACTGTTCCTGCTACTAGCAGCAATTGCCATTACAGTGATGCCGGCACTTATTATGAAGGCGGGGCCAACGGGCCAAACGGGTATGTATCAGTTGTTCCTACTGGGTGGGACTAG	1965	0.4753	MSWFNGGNFSAEKSVRPTRPCYVPPHYRNNGMPDFNNVNSFMSGNGSFAQTGFSSFNSYSSRRQARGGGASNGRFAGPGRGRSGGGRRFGRPEETDERNHYPNRNGFRIPDALDTKESFGEDGDVCGGINFDAYEDIPVEVSGSDVPPPVNTFAEIELSEGLYKNIKRCKYVKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVWKDRSRFLPTAREGWIAYPTALIMSPTRELSCQIHDEAKKFAYQTGVKIVAAYGGAPIAQQFRNLEKGVDILVATPGRLVDMIERGRISLTRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGSRQTMLFSATFPEDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVRDMDKRDHLLDLLRSQMVNGFNGKKALTLVFVETKRGADALENWLSREGFPAIAIHGDKVQAERESALRSFKNGARPILVATDVASRGLDIPHVGHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALVELMQESNQEVPSWLTEYAAESSSYDIYSSKRGQWYGKGNYGGRDFRNMTQHEEGYHNHSVNAGFVENYGTTTAAYGISNLSNDSFDIANTVPATSSNCHYSDAGTYYEGGANGPNGYVSVVPTGWD	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr8g01062	654	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	151	179	IPR014014	GO:0003724
	Accr8g01062	654	Gene3D	-	371	550	IPR027417	-
	Accr8g01062	654	MobiDBLite	consensus disorder prediction	86	110	-	-
	Accr8g01062	654	Pfam	DEAD/DEAH box helicase	175	357	IPR011545	GO:0003676\|GO:0005524
	Accr8g01062	654	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	233	526	IPR027417	-
	Accr8g01062	654	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	392	546	IPR001650	-
	Accr8g01062	654	FunFam	ATP-dependent RNA helicase RhlB	371	550	-	-
	Accr8g01062	654	Pfam	Helicase conserved C-terminal domain	392	507	IPR001650	-
	Accr8g01062	654	CDD	DEADc_DDX3_DDX4	152	374	IPR044763	GO:0003724\|GO:0005524
	Accr8g01062	654	CDD	SF2_C_DEAD	380	516	-	-
	Accr8g01062	654	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	182	368	IPR014001	-
	Accr8g01062	654	MobiDBLite	consensus disorder prediction	59	110	-	-
	Accr8g01062	654	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	119	546	-	-
	Accr8g01062	654	SMART	ultradead3	170	383	IPR014001	-
	Accr8g01062	654	Gene3D	-	114	370	IPR027417	-
	Accr8g01062	654	SMART	helicmild6	426	507	IPR001650	-
	Accr8g01062	654	FunFam	Probable ATP-dependent RNA helicase DDX4	115	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr8g01062	Accr-Chr8	27545345	27548555	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr8g01062	133	539	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.127	1.18e-60	206

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr8g01062	K11594		-	qsa:O6P43_023075	778.474