Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g01060 ATGGCTTGGTTTAATGGGGGTAGCTTCTCGGCCGAGAAGTCGGTTCGCCCGACTCGGCTCTGCTACGTTCCTACTCACTGCAGGAACAATGGCATGCCTGATTTCAACACTGTGAACTCATTCATGTCGGGAAATGGGTCTTCAGCTCAGTCTGGTTTCGCATCCTTCAACTCTTACGGTTCCAGACGACAAGCGAGGGGTCGTGGTGCGAGTAACGGCCGTTTTGGTGGTCGTGGTCGTGGTCGTGGTCGTGGAGGCCGGAGGTTTGGTCGACCGGAGGAGACTGATGAGCAGAACCATTACCCGAATCGGAACGGTTTTAGGATTGACACGCTTGACACTAAAGAGAGTTTTGGAGAAGATGGCGATGTCTGTGGTGGTATTAATTTTGACGCATACGAAGATATTCCAGTAGAGGTCAGTGGTTCCGACGTACCCCCGCCGGTCAATACCTTCGCAGAAATAGAGCTGAGCGAGGGTTTGTACAAGAATATCAAGCGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCATGCGATTCCCATTGCCGTTGCTGGTCGCGACTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTCTGTTTCCCGATTATATCTGGGGTTTTGAGGGATCGTTCTAGGTTTTTGCCTACTGCTCGTGAAGGCTGGATTGCTTATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCATGATGAGGCCAAGAAGTTCGCTTATAAGACCAGAGTGAAGATTGTTGCTGCTTATGGTGGGGCCCCGATTGCTTTGCAGTTTCGCAATTTAGAAAAAGGGGTGGACATCTTAGTTGCAACTCCTGGGCGCCTAGTTGATATGATTGAGAGAGGCAGGGTTTCACTCACACGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATAGGCTTTGAGCCTCAAATTCGGAAGATCGTTTTGCAGATGGATATGCCTCCACCAGGTGCTAGACAGACTATGCTCTTCAGTGCCACGTTCCCAGAGGATATACAGAAGCTGGCTGCGGACTTTCTTTCAAACTACATAGTCTTAGCAATTGGAAGAATTGGTTCCAGCACTGAATTGATTGTACAAAAAGTTGAACTTGTTCAGGATATGGACAAAAGAGACCATCTTTTGGATCTTCTCCGTTCTCAAAGGGTTAATGGGTTCAATGGAAAGAAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAATATTGGCTGTTGAGAAAAGGTTTTCCAGCTATTGCGATACATGGCGACAAAGTTCAAGTGGAGAGGGAAAGCGCCTTGAGATCTTTCAAAAGTGGTGCTCGGCCTATTTTGGTCGCAACCGATGTTGCTTCAAGGGGTTTAGACATACCACATGTGGGTCATGTTGTCAATTTCGACTTGCCGAGAGATATAGATGGCTATGTTCACAGAATTGGCCGAACTGGTCGTGCCGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGAGAAAAACATTCCTCTTGCAAAGGTCCTTGTTGAACTTATGCAAGAATCAAACCAAGAGGTTCCCTCTTGGCTCACCCAATATGCAGCAGAGAGTTCTTCATACGATATCCGTAGCAGCAAAAGGGGCCAGTGGTATGGTAAAGGCAATTACGGCGGCCAGGACTTCAGAAATATGACTCAACATGAAGAAGGGTATCACAACCACTCAGTGGATGCAGGTTCTGTAGAGAACTCTGGCACTATAACTGCAGATTATGACATGTCTGATTCTTACAATGACTCTTATGATATAGCCAACACAGTTCCTGCTACTGGCAGCAATTACCATTACAGTGATGCCGGCGCTTATTATGGAGGTGGGGGGGCTGACGCACCGAATGGGTATGAATCAGTTGTTCCTACTGGTTGGGATTAG 1965 0.4774 MAWFNGGSFSAEKSVRPTRLCYVPTHCRNNGMPDFNTVNSFMSGNGSSAQSGFASFNSYGSRRQARGRGASNGRFGGRGRGRGRGGRRFGRPEETDEQNHYPNRNGFRIDTLDTKESFGEDGDVCGGINFDAYEDIPVEVSGSDVPPPVNTFAEIELSEGLYKNIKRCKYVKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLRDRSRFLPTAREGWIAYPTALIMSPTRELSCQIHDEAKKFAYKTRVKIVAAYGGAPIALQFRNLEKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDIGFEPQIRKIVLQMDMPPPGARQTMLFSATFPEDIQKLAADFLSNYIVLAIGRIGSSTELIVQKVELVQDMDKRDHLLDLLRSQRVNGFNGKKALTLVFVETKRGADALEYWLLRKGFPAIAIHGDKVQVERESALRSFKSGARPILVATDVASRGLDIPHVGHVVNFDLPRDIDGYVHRIGRTGRAGKSGLATAFFSEKNIPLAKVLVELMQESNQEVPSWLTQYAAESSSYDIRSSKRGQWYGKGNYGGQDFRNMTQHEEGYHNHSVDAGSVENSGTITADYDMSDSYNDSYDIANTVPATGSNYHYSDAGAYYGGGGADAPNGYESVVPTGWD 654
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr8g01060 654 FunFam ATP-dependent RNA helicase RhlB 370 549 - -
Accr8g01060 654 CDD SF2_C_DEAD 379 515 - -
Accr8g01060 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 114 545 - -
Accr8g01060 654 MobiDBLite consensus disorder prediction 61 106 - -
Accr8g01060 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 367 IPR014001 -
Accr8g01060 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 545 IPR001650 -
Accr8g01060 654 Pfam DEAD/DEAH box helicase 174 356 IPR011545 GO:0003676|GO:0005524
Accr8g01060 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 523 IPR027417 -
Accr8g01060 654 Gene3D - 367 549 IPR027417 -
Accr8g01060 654 CDD DEADc_DDX3_DDX4 151 373 IPR044763 GO:0003724|GO:0005524
Accr8g01060 654 SMART helicmild6 425 506 IPR001650 -
Accr8g01060 654 SMART ultradead3 169 382 IPR014001 -
Accr8g01060 654 Gene3D - 113 366 IPR027417 -
Accr8g01060 654 MobiDBLite consensus disorder prediction 86 106 - -
Accr8g01060 654 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Accr8g01060 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Accr8g01060 654 FunFam Probable ATP-dependent RNA helicase DDX4 114 369 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr8g01060 Accr-Chr8 27485281 27488995 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g01060 132 538 Eukaryotic Initiation Factors Gene Family AT3G19760 31.618 2.19e-58 200
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g01060 K11594 - qsa:O6P43_023075 758.829