Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00983 ATGTCTCACCCTCTCTGGGAAGCCGATAAAATGTTAGATGTGTATATCCTTGATTATCTCATGAAGAGAAAACTGCATGCTTCTGCAAGGGCATTTCAGCTTGAGGGGAATGTCTCAGCAGATCCTGTAGTTATAGATGCACCAAGCGGTTTTCTTTTGGAGTGGTGGTCTGTCTTTTGGGACATATTTATTGCCAAAACTGCCTGGAAGGACCAAAATCACTCGGAAGCTGCATTATCTTACATTGAGACTCTGCAAACTAAGACTAGAGAGATGCAGAAGCAACAAGTGCATCAAAAACCGAATCAGCATCAGCAAATGCAAATGCAGCAACTTTTGCAGAGGCATGCCCAACAGCAACTACAGCCACAGCAACAGCAGTGTAAGGGTGGGACCCAAGTCGTCAGAGATAGTACCACTGGTCCTGTTGGCAACAATCCTTTGATGAGGCAGAACCATATGATTGTAAATGCCATGGCAACAAAAACACATGAGGAGAGGTTGAAATTTCCTCTCCAGGGAGAAGCCTTAGATAACGCGCCTGCCCGGCAAAGAATTGGCGGTGCTGCAGGTCAACTTGTCAGACCAATTAAGGCCTCATTGTTGAAAGCAACAGCAGCAGCTACAACAGCAACTGTTGGACGTCCTGCAGGTGAAACACTGCATGGTGCACCTAGGGGTTTACCAGGGAATCTTCCACATGTTCAGAGTTGCAACCAGCAACTTGCAGGATTGAATCAAGGAAGTAGCAGTTTGACTTTGAAAGGATGGCCTCTGGCGGGACTGGATCAGCTTTGCTCTGGGTTTCTACCGCAGAATGCTTTAATGCAGTCTCCAGAGTCCTTCAATCAACTTTCACTGCAGCAGCAACTTATGCTCCAAGCACAACAAAATTTAGTGGACACATCTGTCAACAATCTGGATAGCTGGAAAGTTAAAATGCTTCTTAATAATCAAAATATGGGTCCTGAGAAAGATGGCATTCTGAATCCTGTTGGTGATTTAGTTCCTAGTATTGCGACATCTGTTCATGATTTGCCTGACTCAAACTCAAATACATCATTTAAGCAAGTCCAGCAGAGCTGTCAACAAGTTCAACAATATTCACATTATATTCTATCTAGCCAGCAGTCTCAGAATCTTGAGCAGCAAGACAAAATGGTTGGTACTGGCAGCATTCCTAGTATGTTTCAAGGAAATGATCAGGCTTCCAAAAGTCATAGTGGGCGAAAGAGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACCACAGGGCCTTCCAGTACTTCACCGGCAACACCTTCTACACAAACAGTAGACGTGATGTCTGTGTCGTCTCTGCAACAAAATGTTCCTCTGTCCAAGTCACCCCTTATGTTTGGTTCTGATGGTCTGGGCTCATTCACATCAGCACAGAATCAAATGGAAGATATGGACCGTCTTTTAGCTGATGGATCTTTGGGTGACAATGCTGAGTCATTTTTATCTCCTGATGATGCAGACCCTAGAAGTGGATCTGGGAAAGGATTCTCGTTCAAGGAGATCAATCATATAATGGCAAGTACACAACAAATTGAATGCTGCCACTTCTCATCTGATGGAAAGTTACTTGCTACTGCTGGGCGTGATAAAAAGGCTTCATTGTGGTGCACTAACTCGTTGGATTTGAAGTTGACACTTGAAGAGCACACTGAATGGATAACTGATGTTCGATTTAGTCCCAGCATGTCACACATTGCTACATCCTCAGCTGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCTGTTTGTTCGCTCCGTACATTCACTGGACACTCAACAACTGTCAAGTCACTGGACTTTCACCCTTGTAAAGAGGACCTTATCTTCTCTTGTGATAATCATAATGAGATAAGATACTGGAGTATCAAGAATGGTGGTTGTGCTGGGGTTATAAAGATTGGTGCTACGCAGATGAGATTTCAACCTTCGGGGACGCTTCTTTCTGCTGCAGCTGATAATTATATATCTGTCATTGACATTGAACATCCGTTTCAGAGATTTAAATTAGAGGGCCATAAGAACCCTGTCCGTTCTCTGTGCTGGGATTTTTCTGGAGAATATTTGGCATCTGTGAGCAATAACTTGGTTAGGGTGTGGACTGTGAAATCTGGTAAAGGGGAATGCATTCAAGAGTTGAATGCATCCGGCAAGCAATTCAACACTTGTGTTTTCCATCCTTCCTATCCTTTATTGATTATTGGCTGCAATGAGACTCTTGAGCTCTGGAACTTAAGTGAGAACAAGACAATGTCCATACATGCACATGACAATCTTGTATGTTCTTTGGCTGCATCAAATGCTACTGGGTTGGTGGTCTCAGCTAGCCTGGACAAACACGTCAAGATTTGGAAGTGA 2418 0.4371 MSHPLWEADKMLDVYILDYLMKRKLHASARAFQLEGNVSADPVVIDAPSGFLLEWWSVFWDIFIAKTAWKDQNHSEAALSYIETLQTKTREMQKQQVHQKPNQHQQMQMQQLLQRHAQQQLQPQQQQCKGGTQVVRDSTTGPVGNNPLMRQNHMIVNAMATKTHEERLKFPLQGEALDNAPARQRIGGAAGQLVRPIKASLLKATAAATTATVGRPAGETLHGAPRGLPGNLPHVQSCNQQLAGLNQGSSSLTLKGWPLAGLDQLCSGFLPQNALMQSPESFNQLSLQQQLMLQAQQNLVDTSVNNLDSWKVKMLLNNQNMGPEKDGILNPVGDLVPSIATSVHDLPDSNSNTSFKQVQQSCQQVQQYSHYILSSQQSQNLEQQDKMVGTGSIPSMFQGNDQASKSHSGRKRKQASSSGPANSSGTANTTGPSSTSPATPSTQTVDVMSVSSLQQNVPLSKSPLMFGSDGLGSFTSAQNQMEDMDRLLADGSLGDNAESFLSPDDADPRSGSGKGFSFKEINHIMASTQQIECCHFSSDGKLLATAGRDKKASLWCTNSLDLKLTLEEHTEWITDVRFSPSMSHIATSSADKTVRVWDVDNPVCSLRTFTGHSTTVKSLDFHPCKEDLIFSCDNHNEIRYWSIKNGGCAGVIKIGATQMRFQPSGTLLSAAADNYISVIDIEHPFQRFKLEGHKNPVRSLCWDFSGEYLASVSNNLVRVWTVKSGKGECIQELNASGKQFNTCVFHPSYPLLIIGCNETLELWNLSENKTMSIHAHDNLVCSLAASNATGLVVSASLDKHVKIWK 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 773 805 - -
Accr8g00983 805 SMART WD40_4 726 764 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 517 556 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 683 721 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 559 598 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 766 805 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 645 680 IPR001680 GO:0005515
Accr8g00983 805 SMART WD40_4 602 642 IPR001680 GO:0005515
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 555 IPR001680 GO:0005515
Accr8g00983 805 MobiDBLite consensus disorder prediction 125 148 - -
Accr8g00983 805 MobiDBLite consensus disorder prediction 413 443 - -
Accr8g00983 805 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 566 601 - -
Accr8g00983 805 Pfam WD domain, G-beta repeat 770 805 IPR001680 GO:0005515
Accr8g00983 805 Pfam WD domain, G-beta repeat 530 555 IPR001680 GO:0005515
Accr8g00983 805 Pfam WD domain, G-beta repeat 689 720 IPR001680 GO:0005515
Accr8g00983 805 Pfam WD domain, G-beta repeat 564 598 IPR001680 GO:0005515
Accr8g00983 805 MobiDBLite consensus disorder prediction 495 514 - -
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 805 IPR001680 GO:0005515
Accr8g00983 805 Pfam LisH 10 35 IPR006594 GO:0005515
Accr8g00983 805 Gene3D - 606 654 IPR015943 GO:0005515
Accr8g00983 805 MobiDBLite consensus disorder prediction 376 404 - -
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 651 IPR001680 GO:0005515
Accr8g00983 805 PANTHER TRANSCRIPTION ACTIVATOR MSS11 87 248 - -
Accr8g00983 805 Gene3D - 655 805 IPR015943 GO:0005515
Accr8g00983 805 SUPERFAMILY WD40 repeat-like 517 805 IPR036322 GO:0005515
Accr8g00983 805 Gene3D - 509 605 IPR015943 GO:0005515
Accr8g00983 805 MobiDBLite consensus disorder prediction 376 443 - -
Accr8g00983 805 ProSitePatterns Trp-Asp (WD) repeats signature. 585 599 IPR019775 -
Accr8g00983 805 CDD WD40 520 805 - -
Accr8g00983 805 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 601 IPR001680 GO:0005515
Accr8g00983 805 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00983 Accr-Chr8 24933961 24943829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00983 606 804 Miscellaneous Gene Families AT5G08390 23.558 1.26e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g00983 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00983 - - gmx:100801265 847.04