Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00982 ATGTCTCACCCTCTCTGGGAAGCCGATAAAATGTTAGATGTGTATATCCTTGATTATCTCATGAAGAGAAAACTGCATGCTTCTGCAAGGGCATTTCAGCTTGAGGGGAATGTCTCAGCAGATCCTGTAGTTATAGATGCACCAAGCGGTTTTCTTTTGGAGTGGTGGTCTGTCTTTTGGGACATATTTATTGCCAAAACTGCCTGGAAGGACCAAAATCACTCGGAAGCTGCATTATCTTACATTGAGACTCTGCAAACTAAGACTAGAGAGATGCAGAAGCAACAAGTGCATCAAAAACCGAATCAGCATCAGCAAATGCAAATGCAGCAACTTTTGCAGAGGCATGCCCAACAGCAACTACAGCCACAGCAACAGCAGTGTAAGGGTGGGACCCAAGTCGTCAGAGATAGTACCACTGGTCCTGTTGGCAACAATCCTTTGATGAGGCAGAACCATATGATTGTAAATGCCATGGCAACAAAAACACATGAGGAGAGGTTGAAATTTCCTCTCCAGGGAGAAGCCTTAGATAACGCGCCTGCCCGGCAAAGAATTGGCGGTGCTGCAGGTCAACTTGTCAGACCAATTAAGGCCTCATTGTTGAAAGCAACAGCAGCAGCTACAACAGCAACTGTTGGACGTCCTGCAGGTGAAACACTGCATGGTGCACCTAGGGGTTTACCAGGGAATCTTCCACATGTTCAGAGTTGCAACCAGCAACTTGCAGGATTGAATCAAGGAAGTAGCAGTTTGACTTTGAAAGGATGGCCTCTGGCGGGACTGGATCAGCTTTGCTCTGGGTTTCTACCGCAGAATGCTTTAATGCAGTCTCCAGAGTCCTTCAATCAACTTTCACTGCAGCAGCAACTTATGCTCCAAGCACAACAAAATTTAGTGGACACATCTGTCAACAATCTGGATAGCTGGAAAGTTAAAATGCTTCTTAATAATCAAAATATGGGTCCTGAGAAAGATGGCATTCTGAATCCTGTTGGTGATTTAGTTCCTAGTATTGCGACATCTGTTCATGATTTGCCTGACTCAAACTCAAATACATCATTTAAGCAGCAAGTCCAGCAGAGCTGTCAACAAGTTCAACAATATTCACATTATATTCTATCTAGCCAGCAGTCTCAGAATCTTGAGCAGCAAGACAAAATGGTTGGTACTGGCAGCATTCCTAGTATGTTTCAAGGAAATGATCAGGCTTCCAAAAGTCATAGTGGGCGAAAGAGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACCACAGGGCCTTCCAGTACTTCACCGGCAACACCTTCTACACAAACAGTAGACGTGATGTCTGTGTCGTCTCTGCAACAAAATGTTCCTCTGTCCAAGTCACCCCTTATGTTTGGTTCTGATGGTCTGGGCTCATTCACATCAGCACAGAATCAAATGGAAGATATGGACCGTCTTTTAGCTGATGGATCTTTGGGTGACAATGCTGAGTCATTTTTATCTCCTGATGATGCAGACCCTAGAAGTGGATCTGGGAAAGGATTCTCGTTCAAGGAGATCAATCATATAATGGCAAGTACACAACAAATTGAATGCTGCCACTTCTCATCTGATGGAAAGTTACTTGCTACTGCTGGGCGTGATAAAAAGGCTTCATTGTGGTGCACTAACTCGTTGGATTTGAAGTTGACACTTGAAGAGCACACTGAATGGATAACTGATGTTCGATTTAGTCCCAGCATGTCACACATTGCTACATCCTCAGCTGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCTGTTTGTTCGCTCCGTACATTCACTGGACACTCAACAACTGTCAAGTCACTGGACTTTCACCCTTGTAAAGAGGACCTTATCTTCTCTTGTGATAATCATAATGAGATAAGATACTGGAGTATCAAGAATGGTGGTTGTGCTGGGGTTATAAAGATTGGTGCTACGCAGATGAGATTTCAACCTTCGGGGACGCTTCTTTCTGCTGCAGCTGATAATTATATATCTGTCATTGACATTGAACATCCGTTTCAGAGATTTAAATTAGAGGGCCATAAGAACCCTGTCCGTTCTCTGTGCTGGGATTTTTCTGGAGAATATTTGGCATCTGTGAGCAATAACTTGGTTAGGGTGTGGACTGTGAAATCTGGTAAAGGGGAATGCATTCAAGAGTTGAATGCATCCGGCAAGCAATTCAACACTTGTGTTTTCCATCCTTCCTATCCTTTATTGATTATTGGCTGCAATGAGACTCTTGAGCTCTGGAACTTAAGTGAGAACAAGACAATGTCCATACATGCACATGACAATCTTGTATGTTCTTTGGCTGCATCAAATGCTACTGGGTTGGTGGTCTCAGCTAGCCTGGACAAACACGTCAAGATTTGGAAGTGA 2421 0.4374 MSHPLWEADKMLDVYILDYLMKRKLHASARAFQLEGNVSADPVVIDAPSGFLLEWWSVFWDIFIAKTAWKDQNHSEAALSYIETLQTKTREMQKQQVHQKPNQHQQMQMQQLLQRHAQQQLQPQQQQCKGGTQVVRDSTTGPVGNNPLMRQNHMIVNAMATKTHEERLKFPLQGEALDNAPARQRIGGAAGQLVRPIKASLLKATAAATTATVGRPAGETLHGAPRGLPGNLPHVQSCNQQLAGLNQGSSSLTLKGWPLAGLDQLCSGFLPQNALMQSPESFNQLSLQQQLMLQAQQNLVDTSVNNLDSWKVKMLLNNQNMGPEKDGILNPVGDLVPSIATSVHDLPDSNSNTSFKQQVQQSCQQVQQYSHYILSSQQSQNLEQQDKMVGTGSIPSMFQGNDQASKSHSGRKRKQASSSGPANSSGTANTTGPSSTSPATPSTQTVDVMSVSSLQQNVPLSKSPLMFGSDGLGSFTSAQNQMEDMDRLLADGSLGDNAESFLSPDDADPRSGSGKGFSFKEINHIMASTQQIECCHFSSDGKLLATAGRDKKASLWCTNSLDLKLTLEEHTEWITDVRFSPSMSHIATSSADKTVRVWDVDNPVCSLRTFTGHSTTVKSLDFHPCKEDLIFSCDNHNEIRYWSIKNGGCAGVIKIGATQMRFQPSGTLLSAAADNYISVIDIEHPFQRFKLEGHKNPVRSLCWDFSGEYLASVSNNLVRVWTVKSGKGECIQELNASGKQFNTCVFHPSYPLLIIGCNETLELWNLSENKTMSIHAHDNLVCSLAASNATGLVVSASLDKHVKIWK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00982 806 MobiDBLite consensus disorder prediction 496 515 - -
Accr8g00982 806 Gene3D - 656 806 IPR015943 GO:0005515
Accr8g00982 806 MobiDBLite consensus disorder prediction 377 444 - -
Accr8g00982 806 MobiDBLite consensus disorder prediction 125 148 - -
Accr8g00982 806 CDD WD40 521 806 - -
Accr8g00982 806 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 806 IPR001680 GO:0005515
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 602 IPR001680 GO:0005515
Accr8g00982 806 Pfam WD domain, G-beta repeat 771 806 IPR001680 GO:0005515
Accr8g00982 806 Pfam WD domain, G-beta repeat 565 599 IPR001680 GO:0005515
Accr8g00982 806 Pfam WD domain, G-beta repeat 531 556 IPR001680 GO:0005515
Accr8g00982 806 Pfam WD domain, G-beta repeat 690 721 IPR001680 GO:0005515
Accr8g00982 806 Gene3D - 443 606 IPR015943 GO:0005515
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 774 806 - -
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 567 602 - -
Accr8g00982 806 PANTHER TRANSCRIPTION ACTIVATOR MSS11 86 806 - -
Accr8g00982 806 MobiDBLite consensus disorder prediction 414 444 - -
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 556 IPR001680 GO:0005515
Accr8g00982 806 Pfam LisH 10 35 IPR006594 GO:0005515
Accr8g00982 806 SMART WD40_4 518 557 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 684 722 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 727 765 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 560 599 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 603 643 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 767 806 IPR001680 GO:0005515
Accr8g00982 806 SMART WD40_4 646 681 IPR001680 GO:0005515
Accr8g00982 806 Gene3D - 607 655 IPR015943 GO:0005515
Accr8g00982 806 MobiDBLite consensus disorder prediction 377 405 - -
Accr8g00982 806 SUPERFAMILY WD40 repeat-like 518 806 IPR036322 GO:0005515
Accr8g00982 806 ProSitePatterns Trp-Asp (WD) repeats signature. 586 600 IPR019775 -
Accr8g00982 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 652 IPR001680 GO:0005515
Accr8g00982 806 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00982 Accr-Chr8 24933961 24943829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00982 607 805 Miscellaneous Gene Families AT5G08390 23.558 1.28e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr8g00982 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00982 - - gmx:100801265 850.121