Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00980 ATGGGGGTGGTTTTTGATGCTGGGCCTGTGATGATGATGGTGATTCTTGTTCTGTTTCTTCTTCTGACACTGAGTTGGCGAGTTAACTCGGAGCCGACTCAGGACAAGGAAGCCCTACTTGCTTTCATCTCCCGAACTCCTCACGCGAATCGCCTCCAGTGGAACGATTCCGACTCGGCCTGCGACTGGATTGGAGTTCAATGTGACTCGTCGCGTTCTTTTGTGTATTCTCTTCGTCTTCCCGGCGTCGACCTTGTTGGTCCCATTCCGCCTGACACCATCGGCCGGCTCAATCGCCTCCGCGTGCTCAGTCTCCGGTCTAACGGCCTCTCCGGCGAGATCCCCTCGGATTTCTCTAATTTGACCTTGCTTCGTAGCCTCTACCTCCAGGACAACAAGCTCTCGGGCGAGTTTCCCGCCACGGTGACTCGGTTGACTCGTTTGGCGCGTCTGGACCTTTCGTTCAACAATTTCACGGGTTCAATTCCTTTCTCGATCAACAATTTGACCCGCCTGAGTGGTCTTTTCTTGGAAAACAATAGATTCTCTGGGAATCTTCCAAGCATTACCACCAAATTGGTGAGCTTCAATGTTTCCCATAATCAGCTCAATGGTTCAATCCCCGAAACCCTCTCGAAATTCCCCGAAGCCTCATTTGCCGGAAACCTCGCTCTCTGTGGAGCCCCATTACAATCGTGTAACCCATTCTTTCCGGCGCCGGCTCCTTCGGCCGTCGTTCCTTCGATTCCAGTTCACGTAAGAAAGTCCAAGAAGCTCTCCACTGGAGCCATCGTCGGAATTTCAGTTGGCTGTGTTCTTGCTTTCTTGCTACTATTGTTCCTTCTCTTGCTCTGCCTCCGCAGGCGCCAGCGTCAGCAAGCTTCGAAGACGCCGAAGCCGGTGGCAACTGAAACACGGGCTGCTCCAGCGGCGGAAGCGGCAACTTCATCGTCGAAAGACGATGTAACAGGTGGGTCTGCTGAGGCAGCAGAGAGGAGCAAATTAGTTTTCTTGGAACGTGGGATTTATAGTTTCGATTTGGAAGATTTGCTTCGAGCTTCAGCGGAAGTTCTGGGGAAGGGAACCGTTGGTACGTCGTATAAGGCGGTGCTGGAGGAGGGAACGACGGTGGTGGTGAAGAGGCTGAAGGACGTGACGGCGATGAAGAAGGAGTTCGAAACACAAATGGAGATTCTAGGGAAGATTAAGCATCAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAGAAATTGCTCGTCTACGATTACATGCCTGCGGGTAGCGTTGCTGCTCTGCTTCACGGGAGTAGAGGGTCAGGGAGGACCCCACTGGACTGGGATAACCGGATAAGAATAGCGAAAGGAGCTGCAAGAGGGTTGGCCCACCTACACGTGTCAGCAAATGTGGTCCACGGCAACATAAAATCTTCCAACATCCTCCTCCGAGATGACCACGAGGCTTGCGTTTCGGACTTCGGGCTGAACCCACTTTTCGGATCAATCCTCCCATCCAATCGGGTCGGAGGTTATCGGGCACCCGAGGTTGTCGAAACCCGAAAAACTACGTTCCAATCCGATGTGTACGGTTTCGGAGTACTGTTGCTGGAGCTCCTAACCGGTAAGGCTCCGAACCAAGCGACGCTGGGCGAGGAAGGCATCGACCTTCCGAGGTGGGTCCAGTCGGTGGTTCGGGAGGAATGGACCGCCGAAGTGTTCGACGCCGAGCTGACGAGGCAGCACAACGTCGAGGAAGAGATGGTTCAGCTCTTGCAAATAGCGATGGCTTGTGTCTCCGTCGTGCCGGATCAAAGGCCCGCCATGCCGGTTGTGGTTTGTATGATCGAGGATATGAACCGTGGCGGGACTGATGAGGCCTTACGACGGTCTTCCGATGATCCCTCCAGAGGCTCCGACGGTCAAACGCCGCCCCCTGAGGCGCGGACTACAACGTCGTAA 1965 0.5389 MGVVFDAGPVMMMVILVLFLLLTLSWRVNSEPTQDKEALLAFISRTPHANRLQWNDSDSACDWIGVQCDSSRSFVYSLRLPGVDLVGPIPPDTIGRLNRLRVLSLRSNGLSGEIPSDFSNLTLLRSLYLQDNKLSGEFPATVTRLTRLARLDLSFNNFTGSIPFSINNLTRLSGLFLENNRFSGNLPSITTKLVSFNVSHNQLNGSIPETLSKFPEASFAGNLALCGAPLQSCNPFFPAPAPSAVVPSIPVHVRKSKKLSTGAIVGISVGCVLAFLLLLFLLLLCLRRRQRQQASKTPKPVATETRAAPAAEAATSSSKDDVTGGSAEAAERSKLVFLERGIYSFDLEDLLRASAEVLGKGTVGTSYKAVLEEGTTVVVKRLKDVTAMKKEFETQMEILGKIKHQNVVPLRAFYFSKDEKLLVYDYMPAGSVAALLHGSRGSGRTPLDWDNRIRIAKGAARGLAHLHVSANVVHGNIKSSNILLRDDHEACVSDFGLNPLFGSILPSNRVGGYRAPEVVETRKTTFQSDVYGFGVLLLELLTGKAPNQATLGEEGIDLPRWVQSVVREEWTAEVFDAELTRQHNVEEEMVQLLQIAMACVSVVPDQRPAMPVVVCMIEDMNRGGTDEALRRSSDDPSRGSDGQTPPPEARTTTS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00980 654 FunFam Probable inactive receptor kinase RLK902 32 190 - -
Accr8g00980 654 SUPERFAMILY L domain-like 55 226 - -
Accr8g00980 654 FunFam pollen receptor-like kinase 1 322 426 - -
Accr8g00980 654 MobiDBLite consensus disorder prediction 623 654 - -
Accr8g00980 654 MobiDBLite consensus disorder prediction 294 326 - -
Accr8g00980 654 Pfam Protein kinase domain 355 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g00980 654 Pfam Leucine rich repeat 89 134 IPR001611 GO:0005515
Accr8g00980 654 ProSiteProfiles Protein kinase domain profile. 352 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g00980 654 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 427 631 - -
Accr8g00980 654 Gene3D Ribonuclease Inhibitor 34 141 IPR032675 -
Accr8g00980 654 Gene3D Ribonuclease Inhibitor 142 189 IPR032675 -
Accr8g00980 654 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Accr8g00980 654 Gene3D Transferase(Phosphotransferase) domain 1 427 636 - -
Accr8g00980 654 Gene3D Ribonuclease Inhibitor 190 236 IPR032675 -
Accr8g00980 654 CDD STKc_IRAK 358 620 - -
Accr8g00980 654 MobiDBLite consensus disorder prediction 623 637 - -
Accr8g00980 654 MobiDBLite consensus disorder prediction 638 654 - -
Accr8g00980 654 Gene3D Phosphorylase Kinase; domain 1 319 426 - -
Accr8g00980 654 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
Accr8g00980 654 PANTHER OS05G0588300 PROTEIN 13 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00980 Accr-Chr8 24851035 24854633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00980 5 641 Receptor kinase-like Gene Family AT5G58300 50.228 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Accr8g00980 Pkinase 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00980 - - cpap:110818580 930.243