Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00979 ATGTCAATGGGGGTGGTTTTTGATGCTGGGCCTGTGATGATGATGGTGATTCTTGTTCTGTTTCTTCTTCTGACACTGAGTTGGCGAGTTAACTCGGAGCCGACTCAGGACAAGGAAGCCCTACTTGCTTTCATCTCCCGAACTCCTCACGCGAATCGCCTCCAGTGGAACGATTCCGACTCGGCCTGCGACTGGATTGGAGTTCAATGTGACTCGTCGCGTTCTTTTGTGTATTCTCTTCGTCTTCCCGGCGTCGACCTTGTTGGTCCCATTCCGCCTGACACCATCGGCCGGCTCAATCGCCTCCGCGTGCTCAGTCTCCGGTCTAACGGCCTCTCCGGCGAGATCCCCTCGGATTTCTCTAATTTGACCTTGCTTCGTAGCCTCTACCTCCAGGACAACAAGCTCTCGGGCGAGTTTCCCGCCACGGTGACTCGGTTGACTCGTTTGGCGCGTCTGGACCTTTCGTTCAACAATTTCACGGGTTCAATTCCTTTCTCGATCAACAATTTGACCCGCCTGAGTGGTCTTTTCTTGGAAAACAATAGATTCTCTGGGAATCTTCCAAGCATTACCACCAAATTGGTGAGCTTCAATGTTTCCCATAATCAGCTCAATGGTTCAATCCCCGAAACCCTCTCGAAATTCCCCGAAGCCTCATTTGCCGGAAACCTCGCTCTCTGTGGAGCCCCATTACAATCGTGTAACCCATTCTTTCCGGCGCCGGCTCCTTCGGCCGTCGTTCCTTCGATTCCAGTTCACGTAAGAAAGTCCAAGAAGCTCTCCACTGGAGCCATCGTCGGAATTTCAGTTGGCTGTGTTCTTGCTTTCTTGCTACTATTGTTCCTTCTCTTGCTCTGCCTCCGCAGGCGCCAGCGTCAGCAAGCTTCGAAGACGCCGAAGCCGGTGGCAACTGAAACACGGGCTGCTCCAGCGGCGGAAGCGGCAACTTCATCGTCGAAAGACGATGTAACAGGTGGGTCTGCTGAGGCAGCAGAGAGGAGCAAATTAGTTTTCTTGGAACGTGGGATTTATAGTTTCGATTTGGAAGATTTGCTTCGAGCTTCAGCGGAAGTTCTGGGGAAGGGAACCGTTGGTACGTCGTATAAGGCGGTGCTGGAGGAGGGAACGACGGTGGTGGTGAAGAGGCTGAAGGACGTGACGGCGATGAAGAAGGAGTTCGAAACACAAATGGAGATTCTAGGGAAGATTAAGCATCAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAGAAATTGCTCGTCTACGATTACATGCCTGCGGGTAGCGTTGCTGCTCTGCTTCACGGGAGTAGAGGGTCAGGGAGGACCCCACTGGACTGGGATAACCGGATAAGAATAGCGAAAGGAGCTGCAAGAGGGTTGGCCCACCTACACGTGTCAGCAAATGTGGTCCACGGCAACATAAAATCTTCCAACATCCTCCTCCGAGATGACCACGAGGCTTGCGTTTCGGACTTCGGGCTGAACCCACTTTTCGGATCAATCCTCCCATCCAATCGGGTCGGAGGTTATCGGGCACCCGAGGTTGTCGAAACCCGAAAAACTACGTTCCAATCCGATGTGTACGGTTTCGGAGTACTGTTGCTGGAGCTCCTAACCGGTAAGGCTCCGAACCAAGCGACGCTGGGCGAGGAAGGCATCGACCTTCCGAGGTGGGTCCAGTCGGTGGTTCGGGAGGAATGGACCGCCGAAGTGTTCGACGCCGAGCTGACGAGGCAGCACAACGTCGAGGAAGAGATGGTTCAGCTCTTGCAAATAGCGATGGCTTGTGTCTCCGTCGTGCCGGATCAAAGGCCCGCCATGCCGGTTGTGGTTTGTATGATCGAGGATATGAACCGTGGCGGGACTGATGAGGCCTTACGACGGTCTTCCGATGATCCCTCCAGAGGCTCCGACGGTCAAACGCCGCCCCCTGAGGCGCGGACTACAACGTCGTAA 1971 0.5383 MSMGVVFDAGPVMMMVILVLFLLLTLSWRVNSEPTQDKEALLAFISRTPHANRLQWNDSDSACDWIGVQCDSSRSFVYSLRLPGVDLVGPIPPDTIGRLNRLRVLSLRSNGLSGEIPSDFSNLTLLRSLYLQDNKLSGEFPATVTRLTRLARLDLSFNNFTGSIPFSINNLTRLSGLFLENNRFSGNLPSITTKLVSFNVSHNQLNGSIPETLSKFPEASFAGNLALCGAPLQSCNPFFPAPAPSAVVPSIPVHVRKSKKLSTGAIVGISVGCVLAFLLLLFLLLLCLRRRQRQQASKTPKPVATETRAAPAAEAATSSSKDDVTGGSAEAAERSKLVFLERGIYSFDLEDLLRASAEVLGKGTVGTSYKAVLEEGTTVVVKRLKDVTAMKKEFETQMEILGKIKHQNVVPLRAFYFSKDEKLLVYDYMPAGSVAALLHGSRGSGRTPLDWDNRIRIAKGAARGLAHLHVSANVVHGNIKSSNILLRDDHEACVSDFGLNPLFGSILPSNRVGGYRAPEVVETRKTTFQSDVYGFGVLLLELLTGKAPNQATLGEEGIDLPRWVQSVVREEWTAEVFDAELTRQHNVEEEMVQLLQIAMACVSVVPDQRPAMPVVVCMIEDMNRGGTDEALRRSSDDPSRGSDGQTPPPEARTTTS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00979 656 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 429 633 - -
Accr8g00979 656 Pfam Protein kinase domain 357 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g00979 656 Gene3D Phosphorylase Kinase; domain 1 321 428 - -
Accr8g00979 656 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Accr8g00979 656 Gene3D Ribonuclease Inhibitor 144 191 IPR032675 -
Accr8g00979 656 Gene3D Ribonuclease Inhibitor 36 143 IPR032675 -
Accr8g00979 656 Pfam Leucine rich repeat 91 136 IPR001611 GO:0005515
Accr8g00979 656 MobiDBLite consensus disorder prediction 625 639 - -
Accr8g00979 656 MobiDBLite consensus disorder prediction 296 328 - -
Accr8g00979 656 MobiDBLite consensus disorder prediction 640 656 - -
Accr8g00979 656 FunFam pollen receptor-like kinase 1 324 428 - -
Accr8g00979 656 Gene3D Ribonuclease Inhibitor 192 238 IPR032675 -
Accr8g00979 656 FunFam Probable inactive receptor kinase RLK902 34 192 - -
Accr8g00979 656 SUPERFAMILY L domain-like 57 228 - -
Accr8g00979 656 ProSiteProfiles Protein kinase domain profile. 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr8g00979 656 PANTHER OS05G0588300 PROTEIN 15 635 - -
Accr8g00979 656 SUPERFAMILY Protein kinase-like (PK-like) 358 619 IPR011009 -
Accr8g00979 656 MobiDBLite consensus disorder prediction 625 656 - -
Accr8g00979 656 CDD STKc_IRAK 360 622 - -
Accr8g00979 656 Gene3D Transferase(Phosphotransferase) domain 1 429 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00979 Accr-Chr8 24851035 24854639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00979 1 643 Receptor kinase-like Gene Family AT5G58300 49.925 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Accr8g00979 Pkinase 5.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00979 - - cpap:110818580 930.243