Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00978 ATGGCAATACCTTCTGAGTTTAGCCTCGATTGCAAACCCCACCACAGCTTTTCCATGCTTCTCAAATCTTTTCGACACCATAATCACTTTGATCAGACTCACAACCACACGCTCGAAGAATTCGTCTCTCAGCTCGAAGAAGAACGCCTCAAGATCGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCATCAACGCTATGGAGGAATCCAGGCAGAAAATGGAGGCTTTGAAAGGAAATGAAGGCCAGAAAAGTGCAACTCTGGAAGAATTCATACCCTTAAAGCATTCAACTTTTGAAAGCTCTGATAAATCATCAAGCAATGATAATAATTGTGATAAAGCTAATTGGATGATTTCTGCTCAGCTATGGAGCCAAGCTAGTGAAGAAACCAAGCCGCAGTATTCCAAAATTGCATCTCTTAATAACAATAAAGAAGCAGATGATCATCAGATTGTTGGGTTCGATCTTAACCCTAATAAGCTTCACAGAAATATCAATGGTGGAGCCTTTCTTCCATTCACAAATAATAAGGAACGAAATAGCCTTTCTTCGTCGACGCCATTGCAGGCTCTTCCAGAGCTAGCACTTGCCTCTGCTGATGAGAAACAAGCGGAGGAGGATAAGAAATTATACTCAGAGACGACTGAGAATTCTGGTAAAGGAGGAAGAAGTAATAATAATAATAATGGTGGTGATCAAGGAAAAGGGGTTACCGTAGTTTCGTCGTGTGAGGCGAAAACAACCGGTAAAACTGCTGCTTTGACGTCCACCGGTACTACGCAAAGTCATCGGAAAGCAAGAAGGTGTTGGTCGCCGGATTTGCACCGGCGATTTGTGAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGATGATGAAGGTTGACGGATTGACCAATGATGAAGTTAAAAGTCATCTCCAGAAATATCGTCTCCACACAAGACGACCCGGCCCCAACCCGCAAGTAGGTGGGGCAGGGGCCCCTCAGCTCGTAGTTTTAGGAGGAATCTGGGTCCCACCCGCAACAGGCACCCCTAACGCGCTCTTCAGGCCACACCCAGTCTCTCAGGCGCCGCCACCACACTACTTCCCTCACGCCCCGCCGCCCCAAGACTTGATGTACACCGCTTCAACACCACAACCACACCCTCCACCACCTCAGTGGGTACAGAACGACGTCGCAGAGGTACAGGTCGCCAGCATCAGAGACCATAGAAGATAG 1257 0.4733 MAIPSEFSLDCKPHHSFSMLLKSFRHHNHFDQTHNHTLEEFVSQLEEERLKIDAFKRELPLCMQLLINAMEESRQKMEALKGNEGQKSATLEEFIPLKHSTFESSDKSSSNDNNCDKANWMISAQLWSQASEETKPQYSKIASLNNNKEADDHQIVGFDLNPNKLHRNINGGAFLPFTNNKERNSLSSSTPLQALPELALASADEKQAEEDKKLYSETTENSGKGGRSNNNNNGGDQGKGVTVVSSCEAKTTGKTAALTSTGTTQSHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIREMMKVDGLTNDEVKSHLQKYRLHTRRPGPNPQVGGAGAPQLVVLGGIWVPPATGTPNALFRPHPVSQAPPPHYFPHAPPPQDLMYTASTPQPHPPPPQWVQNDVAEVQVASIRDHRR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00978 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 266 326 IPR017930 -
Accr8g00978 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 362 IPR044787 GO:0003700|GO:0006355
Accr8g00978 418 MobiDBLite consensus disorder prediction 203 241 - -
Accr8g00978 418 FunFam Myb family transcription factor 268 326 - -
Accr8g00978 418 MobiDBLite consensus disorder prediction 219 241 - -
Accr8g00978 418 Coils Coil 63 83 - -
Accr8g00978 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 269 324 IPR006447 GO:0003677
Accr8g00978 418 Pfam Myb-like DNA-binding domain 271 322 IPR001005 -
Accr8g00978 418 Gene3D - 268 326 - -
Accr8g00978 418 SUPERFAMILY Homeodomain-like 267 327 IPR009057 -
Accr8g00978 418 Coils Coil 38 58 - -
Accr8g00978 418 MobiDBLite consensus disorder prediction 203 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00978 Accr-Chr8 24800809 24803445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00978 1 374 G2-like Transcription Factor Family AT2G03500 47.328 4.25e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr8g00978 Myb_DNA-binding 3.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00978 8 24800809 24803445 Accr12g00824 12 8300369 8302651 CCT
Accr8g00978 8 24800809 24803445 Accr8g00978 8 24800809 24803445 ECH