Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr8g00948 | ATGCAATTCGCAAAGCTCGATGACTCTCCTATGTTTCGCAAGCAGATGCAATGCCTGGAGGAGAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTGGGGGAGGCATACGATGGTGACATCGCATTTGCAAGTGCTTTGGAAAGTTTTGGTGGAGGCCATAATGATCCCATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTGAATATTGACTTGCATGAAGTCAAGGAAGAACGCAAGCGTTTTGACAAAGCCAGTCTTATTTACGATCAGGCTCGAGAAAAGTTCCTCTCTTTAAGAAAAGGCACAAAAACAGATGTAGCTACTGCTCTTGAAGAGGAACTTCATAATGCAAGATCCGCTTTTGAGCAAGCTCGATTTAATCTGGTTACTGCCTTGTCAACTGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGCTACTTCAAACAGGGGTTTGAGTTATTGCATCAAATGGAGCCATATATTAACCAGGTCCTGACATATGCTCAGCAGTCAAGAGAAAGATCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACTTAAGGCAGGTTGACCGAGAGAGTAGATGGTCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATCGGCAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGTTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGCCTCTTGAGCCGATGGCTATCTTCTCATCATCATCACGGTGGGGTACATGATGAAAAATCTGTTGCCCATCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCAGACCAGTCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCCACAAAGAACTACACTTTGCAGGCAGAGAGTGCAATGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCGCAGATTCCTGAAAGGTGTCTCCCTGCTAGTCCAATGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCATTCTGCTGTAGAAGAATATAAATCAGACAGAGGTCTTGCTTCTGCACATATGGATCGCCCCTCAAGAAGCTTGCAACAGCAGCAACGAGCATGTATCAAAAGTGAGAAGCCAATTGATGTTTTGCGAAGAGTTCGTGGAAATGATATATGTGCTGATTGTGGGGCGCCTGAACCTGATTGGGCATCATTAAATCTCGGTGTTCTTGTCTGTATTGAGTGTTCTGGTGTTCACCGGAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAAATGTTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCTCAGGCTTAAGCAAGTCCGACAAACCACAGGTTCTCTTCATCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTTGCAAGCCAAATGACAAACAATATCGTCTCTTGGTGGCGCAACAGATCTGGGAGGCTGTTCGTTCTAATGACAAGAAAAGGGTGTACCACCACATTGTTAATTATGAAGTTGATGTTAACGCTGTTTATGAGCAAACATGCAGCTCTTCTTTAACCCTTGCCAAAGTGATGCTATTACAAGAGCAGACAGGCCTTGATCACAACTCTGCTTTAGCAGGGAACGCATTCGATTGGTCCTCTACTCTTTTGAATATGGTGGGAGCCAAAGAAGATCCGACCATGAATGATCTTGATGGGTGCACCTTACTTCACCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAAGTATTAAAGCCACTGATATGAGAGGCCAAACACCTCTCCATCGCTGCATTCTCAAAGGAAAATCTACATTGGCAAGATTACTTCTCTCAAGGGGGGCTGATCCTCAAGCTGTGGATGAAGAGGGAAGAACCCCCTTTGATCTTGCTGTACAGTCAAACTTTGACGACAGTGAAGTGCTTGCTTTATTGTCTGATTCAAACGGATGA | 2493 | 0.4292 | MQFAKLDDSPMFRKQMQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALESFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEERKRFDKASLIYDQAREKFLSLRKGTKTDVATALEEELHNARSAFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGFELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYLRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAVEEYKSDRGLASAHMDRPSRSLQQQQRACIKSEKPIDVLRRVRGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQIDLVPSGLSKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFVCKPNDKQYRLLVAQQIWEAVRSNDKKRVYHHIVNYEVDVNAVYEQTCSSSLTLAKVMLLQEQTGLDHNSALAGNAFDWSSTLLNMVGAKEDPTMNDLDGCTLLHLACETADIGMLELLLQYGASIKATDMRGQTPLHRCILKGKSTLARLLLSRGADPQAVDEEGRTPFDLAVQSNFDDSEVLALLSDSNG | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr8g00948 | 830 | Pfam | BAR domain of APPL family | 6 | 232 | IPR004148 | GO:0005515|GO:0005737 | |
| Accr8g00948 | 830 | PRINTS | HIV Rev interacting protein signature | 513 | 532 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | PRINTS | HIV Rev interacting protein signature | 532 | 549 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | PRINTS | HIV Rev interacting protein signature | 555 | 576 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 4 | 250 | IPR027267 | - | |
| Accr8g00948 | 830 | SMART | PH_update | 293 | 430 | IPR001849 | - | |
| Accr8g00948 | 830 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 501 | 647 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | Pfam | Putative GTPase activating protein for Arf | 504 | 639 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | Coils | Coil | 151 | 171 | - | - | |
| Accr8g00948 | 830 | MobiDBLite | consensus disorder prediction | 251 | 269 | - | - | |
| Accr8g00948 | 830 | Pfam | PH domain | 294 | 427 | IPR001849 | - | |
| Accr8g00948 | 830 | MobiDBLite | consensus disorder prediction | 250 | 270 | - | - | |
| Accr8g00948 | 830 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 501 | 641 | IPR037278 | - | |
| Accr8g00948 | 830 | SUPERFAMILY | PH domain-like | 242 | 427 | - | - | |
| Accr8g00948 | 830 | CDD | BAR_SFC_plant | 14 | 215 | IPR035670 | - | |
| Accr8g00948 | 830 | CDD | ArfGap | 504 | 633 | - | - | |
| Accr8g00948 | 830 | Gene3D | Arf GTPase activating protein | 481 | 644 | IPR038508 | - | |
| Accr8g00948 | 830 | SMART | arf_gap_3 | 501 | 646 | IPR001164 | GO:0005096 | |
| Accr8g00948 | 830 | Pfam | Ankyrin repeats (3 copies) | 727 | 800 | IPR002110 | GO:0005515 | |
| Accr8g00948 | 830 | SUPERFAMILY | Ankyrin repeat | 657 | 818 | IPR036770 | - | |
| Accr8g00948 | 830 | Gene3D | - | 645 | 830 | IPR036770 | - | |
| Accr8g00948 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 770 | 802 | IPR002110 | GO:0005515 | |
| Accr8g00948 | 830 | SMART | 5bar | 11 | 218 | IPR004148 | GO:0005515|GO:0005737 | |
| Accr8g00948 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 737 | 769 | IPR002110 | GO:0005515 | |
| Accr8g00948 | 830 | SUPERFAMILY | BAR/IMD domain-like | 6 | 315 | IPR027267 | - | |
| Accr8g00948 | 830 | Gene3D | - | 285 | 438 | IPR011993 | - | |
| Accr8g00948 | 830 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD3 | 4 | 251 | - | - | |
| Accr8g00948 | 830 | MobiDBLite | consensus disorder prediction | 441 | 462 | - | - | |
| Accr8g00948 | 830 | MobiDBLite | consensus disorder prediction | 447 | 462 | - | - | |
| Accr8g00948 | 830 | CDD | PH_ACAP | 295 | 432 | - | - | |
| Accr8g00948 | 830 | PANTHER | CENTAURIN/ARF | 3 | 828 | IPR045258 | GO:0005096 | |
| Accr8g00948 | 830 | ProSiteProfiles | PH domain profile. | 292 | 428 | IPR001849 | - | |
| Accr8g00948 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 770 | 802 | - | - | |
| Accr8g00948 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 737 | 768 | - | - | |
| Accr8g00948 | 830 | SMART | ANK_2a | 770 | 799 | IPR002110 | GO:0005515 | |
| Accr8g00948 | 830 | SMART | ANK_2a | 737 | 766 | IPR002110 | GO:0005515 | |
| Accr8g00948 | 830 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD1 | 482 | 647 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr8g00948 | Accr-Chr8 | 23886842 | 23897245 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr8g00948 | 502 | 643 | C2H2 Transcription Factor Family | AT4G21160 | 40.940 | 1.86e-21 | 94.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr8g00948 | K12489 | - | gmx:100789134 | 1393.25 |