Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00928 ATGGTTAGCCCCAAATCGCAGAGCCCTGAAAGCGTTCCTTGCGATTTCTGTACACAACAAACAGCAATTCTTTACTGCCGAGCTGACTCGGCCAAGCTCTGTTTATTCTGCGATCAACAAGTTCATTCTGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCACCTCCGAGCCCGTCGCCGTCCGATGTAACACCGACAACCTTGTTCTCTGCCGAGACTGCGATTGGGACGCTCATGCCTTCTCCTCCGTTGCCGCCTCTCACCACCGTACCCCTGTTGAGGGTTTCACTGGGTGTCCCTCCGCATCTGAACTCGCTTCGCTTTGGGGGTTTCATTTTGAGAGTAAGACCTCAGATCAATCTCCTTCTTCTTCTTGTTTGATTCAAAACTGGGGTGATTATCGGGATTTGTATGCGCCACTTGAGTCCTGCCTGTTTAAATCCGATGCCGTTCCTCTTCAAGCTCATGACCTCATGGTTCCAAGGGAAACCAGTATGCTTTGCCTGTCCCCGGATTTCCAGGCCGCGGCCTGTAATGCTACAAAGAAACAGGCTCTTTGCTGTGGGAAGCAGAAACAGGTTATACACAAGCAGTTGGTTGAATTGCTCAAGAGGGATTCCGTGGTTGTTGATGTTGTCGGTGGTGGCGCTGAAGTTGACGGTGGCCGCAGCGGTAGCTGTGGTGCTATGCTAGCAAGGCTAAGTGCTGCTAATGAGGCTGAGAATTTGGTTCCTGAAGCACCGAGAAAGAGCCCCGGATATGACCGGCAACCATTTGTTATGGGAAATGAGGTTCAAGGATTTCCGGCGATTACTGCTTCTCAGCAACAACCATTGCAGCAACAAGAACCAGATAGTTCTCCGTTTATGATGCCTTCGCAGTTGCATCACAATGAAGGCGATAGATTGGGGCATAATAATTGCGGCAAGCACTCTATCCAGATATGGGATTTCAATTCTGGACAACTAAGGGATCAGGAAGAATCAAGTGCACTTGAAGCAGCCTATGTAGCAAGTGACGGTGGATTTTTAGCCAAGAATTTTAGTGAACTTATCAGAGAATCATCCATGACCGACACAAAATTGTTGCGAGATATGTACGATATGAATATCGCATATGATGATATGGCGGCATCATATAACGCCCTGTCAAATAACCCAACAACAACAGAGAGCAACAAGCCACCAACAAGAAAGCAATCTGGGAATAATGCAGCTGCTGCTCCTGGGAAGCACAAAGGTAATTGTAGTGTGAAGGAGACACAGATTGGGGAATTTCCTTTGCTTGTCACAGGTGACAGCAATATGGGAAAAGCAGGACGAAGCAAGGCTGACATGGACCTGTTGGCCCAAAACAGGGGCACCGCAATGCTCCGTTACAAAGAGAAAAAGAAAACTCGAAGGTACGAGAAGCACATAAGATATGAATCTAGGAAGATGAGAGCTGACACTCGGAAACGAGTCAAAGGCCGATTTGTAAAGGCTAGTGACGTGGGCGAACCTCCTAATGGTTAA 1533 0.4808 MVSPKSQSPESVPCDFCTQQTAILYCRADSAKLCLFCDQQVHSANLLSRKHLRSQICDNCTSEPVAVRCNTDNLVLCRDCDWDAHAFSSVAASHHRTPVEGFTGCPSASELASLWGFHFESKTSDQSPSSSCLIQNWGDYRDLYAPLESCLFKSDAVPLQAHDLMVPRETSMLCLSPDFQAAACNATKKQALCCGKQKQVIHKQLVELLKRDSVVVDVVGGGAEVDGGRSGSCGAMLARLSAANEAENLVPEAPRKSPGYDRQPFVMGNEVQGFPAITASQQQPLQQQEPDSSPFMMPSQLHHNEGDRLGHNNCGKHSIQIWDFNSGQLRDQEESSALEAAYVASDGGFLAKNFSELIRESSMTDTKLLRDMYDMNIAYDDMAASYNALSNNPTTTESNKPPTRKQSGNNAAAAPGKHKGNCSVKETQIGEFPLLVTGDSNMGKAGRSKADMDLLAQNRGTAMLRYKEKKKTRRYEKHIRYESRKMRADTRKRVKGRFVKASDVGEPPNG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00928 510 MobiDBLite consensus disorder prediction 483 510 - -
Accr8g00928 510 MobiDBLite consensus disorder prediction 483 500 - -
Accr8g00928 510 MobiDBLite consensus disorder prediction 389 410 - -
Accr8g00928 510 Pfam CCT motif 459 501 IPR010402 GO:0005515
Accr8g00928 510 CDD Bbox1_BBX-like 13 56 - -
Accr8g00928 510 Pfam B-box zinc finger 12 52 IPR000315 GO:0008270
Accr8g00928 510 Pfam B-box zinc finger 55 97 IPR000315 GO:0008270
Accr8g00928 510 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Accr8g00928 510 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Accr8g00928 510 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 502 - -
Accr8g00928 510 SMART bboxneu5 9 56 IPR000315 GO:0008270
Accr8g00928 510 SMART bboxneu5 57 99 IPR000315 GO:0008270
Accr8g00928 510 ProSiteProfiles CCT domain profile. 459 501 IPR010402 GO:0005515
Accr8g00928 510 MobiDBLite consensus disorder prediction 389 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00928 Accr-Chr8 23102104 23105132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00928 8 507 C2C2-CO-like Transcription Factor Family AT1G28050 40.472 1.54e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Accr8g00928 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00928 - - pcin:129307671 768.074