Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00900 ATGGACGGTAAAGTTGTGGGAGAGTTGAAGGGGAATGGAACATTTGCAGTGGAGTCATCAACAACATGTGGATCATCATCAGTTAAGAGAAGCAGAACACCAAGTAGTGGAATCCAGCAAGTTGTTTCCTGTTTGGTTGATGGATGCAATTCTGACCTTAGTAAATGCAGAGACTATCATAGACGCCACAAGGTTTGTGAACTTCACTCTAAGACCCCTAAGGTCACTGTGAGGGGTCAGGAACAACGCTTCTGCCAGCAGTGCAGCAGGTTCCACTCATTGGAGGAGTTTGATGAAGGAAAGCGAAGCTGCCGGAAACGTCTTGATGGGCACAACCGACGCCGGAGAAAGCCTCCACCCGTACCTCTGCCATCGACCCCAGCCAGATTTCTTGCTGAATACCCAGGTACTGGAATCTTAGCATTCAACAATTCACAAATACTACCAACGGGCCCTAGTTTGAGCAGTACTTGGGGTGCGCCTGTTAAAGCTGAGAATAATGATTATTATGTTTCGTTCAAGCTTGATGATGGCAGAAATGGGCCAATTGGTGAAACTTTGAGGAGTGAGCAAGAACTGGAAGGACAGACACAGCTTTCATTTCTTCAAGGCCCCAAATCTTCTACACTCTATGGATATTCTGCCACTGAACTGAACTTAAATTCCAACATGGCATCAGATAATAACAACAACCAGAAAGCATTCTCATATTGTGCTCGCTCTCTTCTGTCATCAATAACACCACCTGAGACTAATGAGCTTGCCTTAAGACACATGATTCTTCCAAATGCTTTGAACATGGATGCTTCAGAAATAGTGAGCCATGGCTATGATAATACTACTAATTCTGAGGGGATGATATTTGGTATTGGATCTGATGGGTCTTCTTCCTCTGCTACTTCCCATAAATTCTTCTCTTGGGAGTAA 927 0.4444 MDGKVVGELKGNGTFAVESSTTCGSSSVKRSRTPSSGIQQVVSCLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTVRGQEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPPVPLPSTPARFLAEYPGTGILAFNNSQILPTGPSLSSTWGAPVKAENNDYYVSFKLDDGRNGPIGETLRSEQELEGQTQLSFLQGPKSSTLYGYSATELNLNSNMASDNNNNQKAFSYCARSLLSSITPPETNELALRHMILPNALNMDASEIVSHGYDNTTNSEGMIFGIGSDGSSSSATSHKFFSWE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00900 308 SUPERFAMILY SBT domain 42 120 IPR036893 GO:0003677|GO:0005634
Accr8g00900 308 ProSiteProfiles Zinc finger SBP-type profile. 41 118 IPR004333 GO:0003677
Accr8g00900 308 FunFam Squamosa promoter-binding-like protein 14 35 105 - -
Accr8g00900 308 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 239 IPR044817 GO:0003677
Accr8g00900 308 Pfam SBP domain 44 117 IPR004333 GO:0003677
Accr8g00900 308 Gene3D - 35 105 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00900 Accr-Chr8 21873582 21874845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00900 37 159 SBP-box Gene Family AT5G50670 62.097 2.14e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g00900 SBP 8.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00900 - - pcin:129309840 402.519