Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00890 ATGAGCCTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTCTTGGCGCTGTGTTTCTGGATTATATCAGTCATATACATGAACTGGTTCAACAACGGAGGAATTATGGAAACGAAGGTCGGTTTTCTTGGTGGTGGTGGCAAGATGTGGCTCAAGTGGTGGGAGAAGATCTCAGGCAATAGTTGTAAAATTCATCAACACTACTACCATCGTATTGGATCCAGGAAAGTTCGGAGAACTCTGTGGAGAAAGCTTTTGCTGATATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTTCTTAATGAACTTGCAAGCCACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGACGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCCATCGATCAGAGGACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGGGTTGCTTATGCTGTGAGGGTGCTTCACTCTGAAAGGGAACAGTTCGAGAAGCAACAAGGCTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCTATTCATGAGGATGACTATACCCCTGAAGCAGAGCCTTCCCCAGTTCAAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCTGGAAAGGAAGATCGTGAAAATGTTCTGCGTGCTAGAGATTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTTCTCAAAACCAATCATCTGGGAGTTATCCTCACTTTCGCAGTGTACAACACAGATCTTCCATCAAATGCAACCCCAAACGAAAGGATTCAAGCTACAAATGGGTATCTTGGCGGCGTCTTTGATATTGAGTCATTAGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAATGTATCAGATGATGGATTCTACCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTTAAACAGAAACCTCCATGGCCATGGTTGGCTTGTTCTACATCAATTGGCATCCTTGTTATTGCGCTTCTTGTAGGGCATATTTTCCATGCTACTGTCAATCGAATTGCAAAAGTGGAGGATGATTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTTCTTGGGATGTTGCATATGCTTATGGACACAGATCTTGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCGCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGCAAGCTTGAGCTTGAGGCAGTGCTATTTGACATCCGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAGGAGAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTTACTGTCCATCTTATTGAAGAAGTTGTCAATTCCATTGAAGTTGCAACATCAAAGAATACCTTGAGTGGCTTTCCTGTTGTGGATAGATGTAAAAGCTGGAAAGGATTCAGTTTTCTCAGTCAAGATGGACCTCTGGGTTCTTTCTCATCTTCCTCCCCTGATCGCATTACTCTTATTGTTTCTGTAGAAGATACAGGCGAAGGAATACCTGAAGAAGCCCAACCACGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACTGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGTGAAATTGGATTTGAGAGCACACCGAAGATTGGATCCACTTTCACATTTACAGCTGTCTTTACCAATGAGTCCCCTAGTTCAACTGAGGGTAAAACCCAGCAAATTAACAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACTGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCGTGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTGTCATAAGCAATGCGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCTGGTGTTTCATCTCAGTTTATGAATAACATGAGAAAAATTGATCGAGAAGTTCCTCCAAAGCTGTTCGTTCTTGTTAATTCTAGTAGCTCTTCCAGAGCAAGTTCCATTACATTGGGTATTCATAATCCAACTGTCATTGTAAAACCTCTGAGAGCAAGTATGCTTGCTGCTACACTGCAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCACCTTTTGCGTGGGAGGAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCTCTATGTTGAAGCCGCCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAAGAAGATTCGGGAAATGGAATGCCATGTAAACAAAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATATACCCATTTTGGCTATGACTGCAGATGTGATTCAGGCAACGCATGAGGAATGCCTGAAGTTTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGGGAAGTTTCACGGTTTTTCTAA 3072 0.4281 MSLLYVVGFGLKLGHLLLALCFWIISVIYMNWFNNGGIMETKVGFLGGGGKMWLKWWEKISGNSCKIHQHYYHRIGSRKVRRTLWRKLLLIWVLGWTMVSLWIFFLMNLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYTPEAEPSPVQEEYAPVIFAQETISHVISVDVLSGKEDRENVLRARDLGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLACSTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAVLDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVVDRCKSWKGFSFLSQDGPLGSFSSSSPDRITLIVSVEDTGEGIPEEAQPRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFESTPKIGSTFTFTAVFTNESPSSTEGKTQQINNQPNLASSEFQGMTALVIDPRPVRAKVLRYHIKRLGIRVEIASDLNQGLSVISNADIVINMILVEHEVWDRDSGVSSQFMNNMRKIDREVPPKLFVLVNSSSSSRASSITLGIHNPTVIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISMLKPPHQFDACFMDIQMPEMDGFEATKKIREMECHVNKGEVPVETLENTSNWHIPILAMTADVIQATHEECLKFGMDGYVSKPFEAEQLYREVSRFF 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00890 1023 PRINTS Bacterial sensor protein C-terminal signature 698 711 IPR004358 GO:0016310|GO:0016772
Accr8g00890 1023 PRINTS Bacterial sensor protein C-terminal signature 657 667 IPR004358 GO:0016310|GO:0016772
Accr8g00890 1023 PRINTS Bacterial sensor protein C-terminal signature 674 692 IPR004358 GO:0016310|GO:0016772
Accr8g00890 1023 PRINTS Bacterial sensor protein C-terminal signature 639 653 IPR004358 GO:0016310|GO:0016772
Accr8g00890 1023 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 712 IPR003594 -
Accr8g00890 1023 ProSiteProfiles Histidine kinase domain profile. 449 714 IPR005467 -
Accr8g00890 1023 ProSiteProfiles Response regulatory domain profile. 742 864 IPR001789 GO:0000160
Accr8g00890 1023 FunFam Histidine kinase 4 160 388 - -
Accr8g00890 1023 SMART HisKA_10 442 507 IPR003661 GO:0000155|GO:0007165
Accr8g00890 1023 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 496 709 IPR036890 -
Accr8g00890 1023 Pfam His Kinase A (phospho-acceptor) domain 442 507 IPR003661 GO:0000155|GO:0007165
Accr8g00890 1023 CDD REC_hyHK_CKI1_RcsC-like 891 1019 - -
Accr8g00890 1023 ProSiteProfiles Response regulatory domain profile. 890 1023 IPR001789 GO:0000160
Accr8g00890 1023 Gene3D - 107 159 - -
Accr8g00890 1023 SUPERFAMILY CheY-like 886 1021 IPR011006 -
Accr8g00890 1023 Pfam Response regulator receiver domain 891 1018 IPR001789 GO:0000160
Accr8g00890 1023 PANTHER TWO-COMPONENT HISTIDINE KINASE 98 1016 - -
Accr8g00890 1023 Pfam CHASE domain 159 354 IPR006189 -
Accr8g00890 1023 CDD HATPase_EvgS-ArcB-TorS-like 559 712 - -
Accr8g00890 1023 Gene3D - 506 716 IPR036890 -
Accr8g00890 1023 Gene3D - 884 1023 - -
Accr8g00890 1023 SUPERFAMILY CheY-like 737 865 IPR011006 -
Accr8g00890 1023 ProSiteProfiles CHASE domain profile. 156 381 IPR006189 -
Accr8g00890 1023 Coils Coil 419 439 - -
Accr8g00890 1023 FunFam Histidine kinase 4 414 505 - -
Accr8g00890 1023 CDD PRTases_typeI 843 918 IPR000836 -
Accr8g00890 1023 Gene3D - 410 505 - -
Accr8g00890 1023 SMART REC_2 889 1019 IPR001789 GO:0000160
Accr8g00890 1023 Gene3D - 731 866 - -
Accr8g00890 1023 SMART HKATPase_4 554 714 IPR003594 -
Accr8g00890 1023 CDD HisKA 442 503 IPR003661 GO:0000155|GO:0007165
Accr8g00890 1023 Gene3D CHASE domain 160 388 IPR042240 -
Accr8g00890 1023 SMART CHASE_2 156 356 IPR006189 -
Accr8g00890 1023 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 427 508 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00890 Accr-Chr8 21064522 21069389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00890 1 1023 Miscellaneous Gene Families AT1G27320 68.642 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr8g00890 CHASE 1.4e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00890 K14489 - gmx:100801546 1671.75