Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00885 ATGGACTGGAATGCAAAGTCTTTACCGCAGTGGGATTGGGAACACCTACTTTTTAACACAAAAGCAACTGAGAATTTTAGGTTAAAGCAGGTCGGTTGGAGTGGCAAAGAAGATGGAGAAATCAATGTTGGGCTGTTCAATCCAACATGTGGTATTGATTGTTCTGCGTCTGAGCTACAGCATGTGTCTTCATCAAGGGGCTCAAAATCAGCTTCCATGAATTCTTCATCAAATGGGTATAGCAGAACATCAGTGCTCACTTTTGAAGGTTCACAAGAAGATTCTAATGGTACAAAAGAGAGGTCAAAAGAAGAGCCTGTTGGAAATTCTCCCTCACTTGAACATTTTTCTGTCTCTGGTGAACCTTTGCACAGTCTAAAGCTGGGCAAACGGCTGTACTTTGAAGATGTCTGTGTTGGAAGTGATCCAAAGAACACATCTCAGTCTGGGATTCCCATGCCATCTTTGAGTACTGGGAAAAAATGCAAGTCAAATAGTCAGAGCTCACAGCCTCCGCACTGCCAGGTTGAAGGCTGTGACCTTGACCTATCATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCAAATGTGGTTGTAGATGGTAAGGAGCGTCGGTTTTGCCAGCAATGTAGCAGGTTCCATGGTCTCTCAGAGTTTGATGGGAAAAAAAGAAGCTGCCGGCGTCGTCTTTCTGATCATAATGCTAGGCGTCGGAAGCCTCATCCTGAAGCTGTCCAATTGAATGCATCATTTTTGTCCTCATCGCCATACGATGGGGAGCAACAGATGAGCTCATTTTCTAATTCAAGGGCTATCAACTTCGCTTGGCAGGATACATACAGCAGCAGGATCTCCCAAAAGAAAGAATTTCTCATTAAACCTGCAAAAGTAGGAGGTACCACTGGGCAGGTGCATCAGCCCTTCAATGACATCCCCACTGCCTTTTCGAAGCCTTCTGAAGGTTCTGGTGGCCTTTGCTCATCCAAAGGCATAGCAACAAAGACAGTCAATCCAGGGATAGAAGATTTCATTAGCTCACCAGATCTGAATGATCCACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCACCTCTTGGGGTCCATTCGACACAAAGTTTGCTTCTCAAGAGCACTCTAATCGCTCGACCACTACCGGTACGACTCAGGCTTTATCACACTCAATGATTCAGTGCTTGCCTTATGCTTCATCAGACTACTGGCAGAATTGTCAACAACCAGTCGACAGCCGTATGGGTGTCTCTTACTCGGACTGTAAAGATGACAGTCACTTTGAAGATTTCCAGTTGCTTAGAGCACCCTATGAGTCTGGCTTTTGCAATCAGTTGGATTAA 1383 0.4497 MDWNAKSLPQWDWEHLLFNTKATENFRLKQVGWSGKEDGEINVGLFNPTCGIDCSASELQHVSSSRGSKSASMNSSSNGYSRTSVLTFEGSQEDSNGTKERSKEEPVGNSPSLEHFSVSGEPLHSLKLGKRLYFEDVCVGSDPKNTSQSGIPMPSLSTGKKCKSNSQSSQPPHCQVEGCDLDLSSAKDYHRKHRVCESHSKSPNVVVDGKERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNARRRKPHPEAVQLNASFLSSSPYDGEQQMSSFSNSRAINFAWQDTYSSRISQKKEFLIKPAKVGGTTGQVHQPFNDIPTAFSKPSEGSGGLCSSKGIATKTVNPGIEDFISSPDLNDPQDFHRALSLLSTTTSWGPFDTKFASQEHSNRSTTTGTTQALSHSMIQCLPYASSDYWQNCQQPVDSRMGVSYSDCKDDSHFEDFQLLRAPYESGFCNQLD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00885 460 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Accr8g00885 460 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Accr8g00885 460 MobiDBLite consensus disorder prediction 65 118 - -
Accr8g00885 460 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 398 IPR044817 GO:0003677
Accr8g00885 460 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Accr8g00885 460 MobiDBLite consensus disorder prediction 143 174 - -
Accr8g00885 460 MobiDBLite consensus disorder prediction 94 108 - -
Accr8g00885 460 MobiDBLite consensus disorder prediction 65 93 - -
Accr8g00885 460 Pfam SBP domain 174 247 IPR004333 GO:0003677
Accr8g00885 460 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00885 Accr-Chr8 20828063 20830619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00885 1 376 SBP-box Gene Family AT5G43270 38.660 1.60e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr8g00885 SBP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00885 - - pcin:129309383 770