Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00870 ATGGTGAAGTACTCCAGAGAACCTGACAATCCTACTAAGTCCTGCAAGGCCAGAGGCTCCGACCTTAGAGTTCATTTTAAGAACACTAGGGAGACAGCGTTTGCCATCAGGAAGTTGCCCTTGGTAAAGGCAAAAAGGTATTTGGAGGATGTGATAGCCCACAAACAGGCTATTCCCTTCAGAAGGTTCTGTGGCGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGATGGCCTGTGAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCAGAGAGTAATGCCGAAGTGAAAGGCTTGGATGTAGATGCTCTTCACGTTTCTCACATCCAGGTTAATCAAGCACAGAAGCAAAGACGCAGAACCTACCGTGCTCATGGAAGAATCAACCCCTACATGTCATCTCCATGCCACATAGAGTTGATCCTATCTGAAAAAGAAGAGCCTGTGAGGAAGGAGCCGGAGACCCAGTTGGCAACAAGCAAGAAAGCATAA 519 0.4701 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVIAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETQLATSKKA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00870 172 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr8g00870 172 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Accr8g00870 172 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr8g00870 172 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Accr8g00870 172 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Accr8g00870 172 PANTHER 60S RIBOSOMAL PROTEIN L17 1 171 IPR005721 GO:0003735|GO:0006412|GO:0015934
Accr8g00870 172 FunFam 60S ribosomal protein L17 1 172 - -
Accr8g00870 172 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Accr8g00870 172 Gene3D Ribosomal protein L22/L17 1 172 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00870 Accr-Chr8 20163004 20165086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00870 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.474 6.26e-115 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00870 K02880 - gmx:100305777 338.576