Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00864 ATGATGGATGCTGCTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTACAATGTATTGCAAAGTATTGTCAATATTTCCATCCTTAGAAGCAGCTAGACCTAGGAGCAAAGCTGGCATTGAGGCTTTATGTTCATTGCATGTAGCCCAAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGTTGTTCTTCTAAAATTTGAGAAGGCTAAATCTGCTATTAAAGATGGCCTTAGGCAGGTGGAAGATATTGTCCCGCGATCTATTGCATGTCGGTGTCAGGAGATTGTGAATGAACTCGAAGGAGTAAAATTTGCACTTGACCCAATGGAGAAGCAAGTTGGTGCTGATTTAATTTCACTGCTTCAGCAAGGGAGACAGTGTGGCGACTCTAGTGACGCCAGTGAGCTTGAATGTTTTCACCAGTGTGCTATTAGGCTTGGAATCACATCTTCAAGAGAAGCTCTTACTGAAAGAAGATCTCTCAAGAAGCTCATTGAGAGAGCTAGGGCTGAGGAAGACAATCAGAAGGAATCAAAAGTTGCTTATCTTCTACACCTCATGAGGAAATATTCCAAGTTATTTAAAACTGAAATTTCAGAAGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCAGTACTCCTAATACTCAATGTCAGGCGTTCGAAAGAGAGATCTCAAAACGCTTTGCCGTGAATTTGAATCCAATCAATAGCAAATTGGGACAGGTGCCTCTTCCGCCTGAAGAGCTGAGGTGTCCATTATCTTTGCAGCTTATGTATGATCCTGTCATCATTGTTTCCGGGCATACTTATGAAAGGGTTTGCATTGAGAAATGGTTCAGCGATGGACACAACACTTGCCCCCAGACTCAACAGAAACTTGACCATCTTTTGCTGATTCCGAATTACTGTGTTAAGGGTCTTGTCATTAGTTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCACCTGAATCGTTTGAAATTAACTACTCGAGATTGGTGCTACCAGAACCTGAATCATTAACAAATTCAAAATCTGTCAACAGTTTGAGCTCATGCAAGTTGAAGAGTGTCAAAGCGGTTCCTTTCGAAGAGAGCAGTATCTCAGAGGAAGCCAGGGTGGATACGGACGAATGTTTGCCTGCAGAGGAGCATGATGCAGAGAAGTGTCTTAGATTTCAGAAAGTTTTGGTTGAAGAGACCAATTACAGGACGAAGTGCAATGTGGTCGAACAGTTAAGGATAATACTGAGGGATAACGAGGAAGCCAGGAGTTATATGGGAGCTCATGGATTTGTCGAGGCACTTTTACAGTTTCTAAGGTCTGCTGTGTCTGAAGGGAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGATATCAGCAGGAGTATTACCACTGCTGGAGGAAATTTCTAACACAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAACCAAGACCAAGATTGGGAAGACTCAGGCTGTCCAGTTCCTAATCCGTCTCCTCCAAGCCGACACCGAAGTCCAATGCAAGCAAGATTCTCTCCACGCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTCTCATCTGGGATCATCAATGGCCTTCTGTCCCTTCTTTCAGACCAGGGTGATGATAATAGCATGTGGGCAGAGAAATGCATTCCTATTCTGATAAATTTGGCTGCTTCCAGTTTGGGAAAAGAGGAAATAATCTCAACTCCAGGACTTATTATTGCTCTGGCTAGGAAACTAGAATCTAGTGAGCTCTTAGAGCAAGAACAAGCTGTGACTTGTCTCTTAATCTTGTGTAATGGCAATGAGAGATGTAGCTACAAGGTCCTACGAGAAGGTATAATACCTGCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGGGAAAGAAAAGGCTCAGAAACTTTTGATGCTCTTTAAGGATCAGCGACAACGAGATCCTTCGCCTGTGGAGACGCGTTTGTGTCCCACTACTGCTCTTGAACCTAAGATGAATGTGGCTGTTGTTCCTCAGTCGACAACGAAACCTGTGATGACTAAGTCATTGTCTAGAAGGATAATTGAGAAGCCTTTTAGATTTTTCTCCAAAAGCAAGAGTTATTCTGTTTACCAGATATAA 2298 0.4286 MMDAAEVEENLFAASDAKLHGEMCKALSTMYCKVLSIFPSLEAARPRSKAGIEALCSLHVAQEKAKNVLQHCSECSKLYLAITADVVLLKFEKAKSAIKDGLRQVEDIVPRSIACRCQEIVNELEGVKFALDPMEKQVGADLISLLQQGRQCGDSSDASELECFHQCAIRLGITSSREALTERRSLKKLIERARAEEDNQKESKVAYLLHLMRKYSKLFKTEISEDNDSQGSAPCSPSTPNTQCQAFEREISKRFAVNLNPINSKLGQVPLPPEELRCPLSLQLMYDPVIIVSGHTYERVCIEKWFSDGHNTCPQTQQKLDHLLLIPNYCVKGLVISWCEQNGVPVPDGPPESFEINYSRLVLPEPESLTNSKSVNSLSSCKLKSVKAVPFEESSISEEARVDTDECLPAEEHDAEKCLRFQKVLVEETNYRTKCNVVEQLRIILRDNEEARSYMGAHGFVEALLQFLRSAVSEGNLKAQESGAMALFNLAVNNNRNKAIMISAGVLPLLEEISNTSSYGCATALYLNLSCLEETKTKIGKTQAVQFLIRLLQADTEVQCKQDSLHALYNLSTVPSNIPNLLSSGIINGLLSLLSDQGDDNSMWAEKCIPILINLAASSLGKEEIISTPGLIIALARKLESSELLEQEQAVTCLLILCNGNERCSYKVLREGIIPALVLISVNGTPRGKEKAQKLLMLFKDQRQRDPSPVETRLCPTTALEPKMNVAVVPQSTTKPVMTKSLSRRIIEKPFRFFSKSKSYSVYQI 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00864 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Accr8g00864 765 SUPERFAMILY RING/U-box 272 348 - -
Accr8g00864 765 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Accr8g00864 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 505 IPR000225 GO:0005515
Accr8g00864 765 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Accr8g00864 765 FunFam RING-type E3 ubiquitin transferase 271 345 - -
Accr8g00864 765 SMART arm_5 448 492 IPR000225 GO:0005515
Accr8g00864 765 SMART arm_5 532 573 IPR000225 GO:0005515
Accr8g00864 765 Gene3D - 392 706 IPR011989 -
Accr8g00864 765 Coils Coil 176 203 - -
Accr8g00864 765 PANTHER U BOX DOMAIN-CONTAINING 24 704 - -
Accr8g00864 765 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Accr8g00864 765 CDD RING-Ubox_PUB 273 325 IPR045210 -
Accr8g00864 765 SUPERFAMILY ARM repeat 425 698 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00864 Accr-Chr8 19935361 19939050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00864 2 764 U-box Gene Family AT1G24330 61.004 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00864 - - gmx:100794099 1038.48