Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00848 ATGGATTCCGATTCAGACTCAGATGGTTCTCATGTCTCTGCTACGCCCCCCAGGGAAGAGCCTCCACCATCCTTGACGGTACAACCGCCACTACCGCGGCCAAAACCTGTTCTCGTTTCCAACAAATTGAAACTGTGTTCCTCGTCCAGTGATAAATCTTCAAAATCCAAAATACGCCCTTCTAGACCCGCAAAACCGTCGTCCAAACAGGAACCCACTCAAGAAGAATTGCCCTGTAACTCCTTTTGCCTCCCAACTCTGCCCTTCCAAATTCGTCGACCTTCTGACTGTGTCACTCAACTGTCAACTGCACAGTCCTTTGAAACACTCCCAGCTGGGTACTTCTCCAAATCTGCCTCTTTCTCAAAAATTCGAAGGCCTTTTCTCAGTTCTACATATTCTTCTGGAAATGGACCTCCTCTTGATTTTGTATCTAACGCTGGCCTCAAGAACGAGAATAATGAGAGTTATTGTCACCTGGGTGGTTCTATTCCGGTAGAAGTAGAGGGCGAAAGTCTAAGAGCAACGACTGTGTCAAAATTAGGAAAGAGACATCCTAATCTGATAGGAGCTAATGTGCCGGTGCCATCTATTAAGGTGAGAAAATGTGCTTTTGAGGGAAATTTTGTGAGGTTGAACCTGAATAGCAAGAGGTGGAAGTTGCGGAGCCATGGAAAAAAGAAAAATTCTGCATATGGTAAGCGTAGAAGTTACAAGAGAGATAGAGTTAAATCGAAGCGTGAAGATCAGGATCAAGTGAAGTCGTTCTTAGAATCTGAGGGGGATGCATTTGTTGCGCAGACCGCACAAAAGAAGTCCAGGGATTCTCGTGGTGCCAAAGAATTTGATTGTAAAGTGATTGAAGAGGCGGTTTCAGCTGTTCGAGAAGACCCATCTGATGAGAATCTGGTGAAGTTGCTACAGTTAGTTTATGGCTATGATTCTTTTCGAGATGGTCAATTGGAGGCAATCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACGGGCGCAGGAAAGTCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCCTGGTCGTTAGTCCATTGGTAGCCTTGATGATTGATCAACAAAGAAAATTGCCTCCTATGATTAATGGAGGACTTCTATGCAGCAGTCAGGCACCTGAAGAAGCCTCCGAAACGCTGAAGCATCTTCAAGAAGGTGTATTAAAGGTGCTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAGTTTCCACTGCTTCAACTGTATCTCTTGTTGTTGTTGATGAAGCCCATTGTATTTCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTTTTCTCCATAACAAGCTCAATGCAGGTTCTTTTCTGGCAATGACAGCAACTGCTACAACCATAACTTTAAATTCTGTCATGTCTGCTTTGGATATTCCTTGCACAAATCTCATCCAGAAGACACAGTTGACAGACAATTTGCATTTATCAGTCTCTTTAGCTAGAAATAGAATGAAAGACTTGTTGGCGCTGATCAAGTCTCCTCCGTATGTGGAAGCTCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAGCTGATACAATTAGCAAATACTTGAGTGACAACAATATCTCTGCGAAGAGTTATCATAGCAGTATTCCTGCAAAGGAGCGTAGCTATGTACAGGAGTTGTTTGGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTTGCATTTGGCATGGGATTAGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTATGTTCAGGAGATTGGACGTGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCGCCTATTTTATGATGATGAGACATATGTCAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTATCTGTGAAGTATTTCCTGCTCACAGGATTTCCAGCGGTCAAATATGTTCCTTGATCAAAGAATCTGCTTCACGGAGGTTTGACATGAAGGAAGAGGTGATGCTGACGCTTTTGACACGCTTGGAGCTGGGTGATGTGCAGTACTTACGTTTACTTCCACACATAAATGCCACTTGCACTTTGAGTTTTCACAAGACTCCCCCTCCATTACTTGCCCAAAAGGACTCTGCTGTTGCTGCGATACTGAAAAGGTCTGAAAATAAGCAAGGGCTATATGTTTTTGACATGCCCTCTGTGGCTAATGACATGGGAGTTACAGTTGTTGAAATATCAAATCAGTTGCACAATCTAAAGTTGCTTGGAGAAGTAACCTTTGAGATGAAGGACTTGGCCTATTGCTATACAATTGTTAAAGCACCAACAGATTTTTTTGCGTTGTCAGAAAATCTAACACGATGGTTATATGAGTTTGAAAGATCAAAGGTACGGAAACTGGATGCTATGTATGATGCGGCATATCATGCAGTAAATATTTGTGATAAGACGCCAGGTTGTAGTGGTTCTGATCACACACCATGCTTGCAAAGGAAAATATTAGATTACTTTGCCGGGGTTGATAATGATTCCTTGTCCAAGAAGTTGGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCAAATTCACCCCAAGAGCCACTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCTGCTGTTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGGCATGTTGACTTTCAGGTGGTGATGGAAGCAGCAAAGGAAGAACTCAAGAATTTTGTTGGGAAAGACAGCTCTAGCCAGAGATAA 2871 0.4288 MDSDSDSDGSHVSATPPREEPPPSLTVQPPLPRPKPVLVSNKLKLCSSSSDKSSKSKIRPSRPAKPSSKQEPTQEELPCNSFCLPTLPFQIRRPSDCVTQLSTAQSFETLPAGYFSKSASFSKIRRPFLSSTYSSGNGPPLDFVSNAGLKNENNESYCHLGGSIPVEVEGESLRATTVSKLGKRHPNLIGANVPVPSIKVRKCAFEGNFVRLNLNSKRWKLRSHGKKKNSAYGKRRSYKRDRVKSKREDQDQVKSFLESEGDAFVAQTAQKKSRDSRGAKEFDCKVIEEAVSAVREDPSDENLVKLLQLVYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQQRKLPPMINGGLLCSSQAPEEASETLKHLQEGVLKVLFVSPERLLNEEFLSVVSTASTVSLVVVDEAHCISEWSHNFRPSFMRLRASFLHNKLNAGSFLAMTATATTITLNSVMSALDIPCTNLIQKTQLTDNLHLSVSLARNRMKDLLALIKSPPYVEAQSIIIYCKFQSEADTISKYLSDNNISAKSYHSSIPAKERSYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCRLFYDDETYVKLRSLMYSDGVDEYAVNKFICEVFPAHRISSGQICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLRLLPHINATCTLSFHKTPPPLLAQKDSAVAAILKRSENKQGLYVFDMPSVANDMGVTVVEISNQLHNLKLLGEVTFEMKDLAYCYTIVKAPTDFFALSENLTRWLYEFERSKVRKLDAMYDAAYHAVNICDKTPGCSGSDHTPCLQRKILDYFAGVDNDSLSKKLDQSSPFLRADIKVFLQSNSQAKFTPRATARIMHGIASPAYPSAVWSKTHFWGRYRHVDFQVVMEAAKEELKNFVGKDSSSQR 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00848 956 Gene3D - 286 493 IPR027417 -
Accr8g00848 956 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 494 IPR014001 -
Accr8g00848 956 Gene3D - 503 692 IPR027417 -
Accr8g00848 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 644 IPR027417 -
Accr8g00848 956 SMART ultradead3 312 508 IPR014001 -
Accr8g00848 956 MobiDBLite consensus disorder prediction 16 36 - -
Accr8g00848 956 MobiDBLite consensus disorder prediction 221 252 - -
Accr8g00848 956 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 673 IPR001650 -
Accr8g00848 956 Pfam DEAD/DEAH box helicase 318 477 IPR011545 GO:0003676|GO:0005524
Accr8g00848 956 NCBIfam RecQ family ATP-dependent DNA helicase 306 650 IPR004589 GO:0004386|GO:0006310
Accr8g00848 956 PANTHER DNA HELICASE RECQ FAMILY MEMBER 290 807 - -
Accr8g00848 956 CDD SF2_C_RecQ 503 635 - -
Accr8g00848 956 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 431 440 IPR002464 -
Accr8g00848 956 FunFam ATP-dependent DNA helicase Q-like 5 502 693 - -
Accr8g00848 956 FunFam ATP-dependent DNA helicase Q4 284 494 - -
Accr8g00848 956 Pfam Helicase conserved C-terminal domain 520 625 IPR001650 -
Accr8g00848 956 MobiDBLite consensus disorder prediction 1 77 - -
Accr8g00848 956 CDD DEXHc_RecQ4-like 304 497 - -
Accr8g00848 956 SMART helicmild6 545 626 IPR001650 -
Accr8g00848 956 MobiDBLite consensus disorder prediction 42 77 - -
Accr8g00848 956 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00848 Accr-Chr8 19173881 19181352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00848 535 658 Eukaryotic Initiation Factors Gene Family AT3G19760 32.540 2.82e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00848 K10730 - qsa:O6P43_023885 1162.9