Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00836 ATGGACAGTGGTTTCTCTTCTCCACGACGCGACGCTTTTCCAGCTGGTCTGCGTGTTCTCGTCGTTGATGATGACCCAACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAATGCTCTTATGAAGTGACCACATGTGGTTTAGCAAGGGAGGCTCTAAACTTGCTTAGGGAAAGAAAAGATGGATACGACATTGTTATCAGTGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATAATGATGTCTGTGGATGGAGAAACTAGCAGGGTGATGAAAGGTGTCCAACATGGAGCGTGTGATTATCTCCTCAAGCCAATTCGGATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCGAGAGAATTTGAAGGTCATGAAGGATTCGAGGGCATTCATTTAATGAGAAACGGATCAGATCAGTCTGAAGATGGGATGTTGTTTTCCCTCGAAGATATGCCCTCCATGAAGAAAAGAAAAGACCTCGATAACAACCATGATGACAAAGAATTTGGAGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCAGTGGATCTTCATCAGAAATTTGTCAAAGCTGTGAATCAAATTGGATTTGACAAAGTTGGCCCCAAAAGAATTTTAGATTTAATGAATGTTCCTTGGCTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCTGAAAGAAAATGATCAGAGATCTTCCTCAAGTGGGACCAAGCCTTCAGATTTGCCTCCAAGAGACACTGCAGGAGATTTTGGATTTCAGAACTTGACAAACAAGCAGCAAAATGATGTTGCAGTTGACAGCTTCAATTATTCGGACGTACCATTACAGAGTCATTCCTCTGAGACCAAGATTCGTAACGGTGATCTCAAGGCGATTGTTTCAGATTCCATAGCTGAAAAAAGAAGAGCTTTATCTGGCAGCATTCCTGGTACAAAGGTAAGTCCCCAGATAAGTCTTAACCATTCTTCTTTTGGACCTCTCAAGCCAGAAGGAAGGCATGCAGTATTCGATTGCACCATCCCTTCGACTCAGTTCACCTGGAGCGAAACTCCAGAAATGCCACTCAAGAAAGAACACAAGTCATTTCTTCAATTGGAAGATAGCAGCTTCAGTCACTCACCATTACATGTCACACAGCGCAAGATTCAGGGGCTCAAATCACATTCAGTTGCTTCAGTTTGTTCGAACCCGACTATCACAGAGAGCGAGGTTGCTGCCTCGGTTGAAACTAAGCCGATGTATGCTGATTACAAAAGGGAGTATGCCAGTTCTGTGAGTTCAATAGGCAGTGTAGTGGACACGATTCCTACCCAGTCCAAGAGCCTTATGGAGAATGCTCAACTTTCAGAACCTTCTTCGGCTAAGAACTTGGCCATGAAAACTCAGGGCTTCAATTATGACCTTGAATTTTACCCCGAAAACCTATTGGACGAGGACTTACATTTCTATTGGCTGCAAGGTGAATACTATAATATGAACTGGGGATTCGAGAACATAGGAATGCCAGAGTATTATGATCCAGGTCTTGTTGCAGAACTTTCAAGTCACTTACATGATTCTGCAGATTGTACTCTTGTAGATCAAGGCCTATTCATAGCATAA 1704 0.4284 MDSGFSSPRRDAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEGIHLMRNGSDQSEDGMLFSLEDMPSMKKRKDLDNNHDDKEFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLLKENDQRSSSSGTKPSDLPPRDTAGDFGFQNLTNKQQNDVAVDSFNYSDVPLQSHSSETKIRNGDLKAIVSDSIAEKRRALSGSIPGTKVSPQISLNHSSFGPLKPEGRHAVFDCTIPSTQFTWSETPEMPLKKEHKSFLQLEDSSFSHSPLHVTQRKIQGLKSHSVASVCSNPTITESEVAASVETKPMYADYKREYASSVSSIGSVVDTIPTQSKSLMENAQLSEPSSAKNLAMKTQGFNYDLEFYPENLLDEDLHFYWLQGEYYNMNWGFENIGMPEYYDPGLVAELSSHLHDSADCTLVDQGLFIA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00836 567 SMART REC_2 17 129 IPR001789 GO:0000160
Accr8g00836 567 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Accr8g00836 567 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Accr8g00836 567 MobiDBLite consensus disorder prediction 261 287 - -
Accr8g00836 567 CDD REC_typeB_ARR-like 19 133 - -
Accr8g00836 567 Gene3D - 17 172 - -
Accr8g00836 567 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Accr8g00836 567 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Accr8g00836 567 FunFam Two-component response regulator 195 258 - -
Accr8g00836 567 PIRSF RR_ARR_type-B 1 527 IPR017053 GO:0003677|GO:0003700|GO:0009736
Accr8g00836 567 SUPERFAMILY CheY-like 16 141 IPR011006 -
Accr8g00836 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 315 IPR045279 GO:0009736
Accr8g00836 567 FunFam Two-component response regulator 17 173 - -
Accr8g00836 567 Gene3D - 195 258 - -
Accr8g00836 567 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00836 Accr-Chr8 18389289 18393311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00836 11 265 Response Regulator Gene Family AT2G25180 54.167 3.44e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Accr8g00836 Response_reg 2.1e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00836 K14491 - gmx:100797421 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00836 8 18389289 18393311 Accr8g00836 8 18389289 18393311 ECH